We evaluated elevation changes at four sites on debris-covered ablation area of Khumbu Glacier, Nepal Himalaya, since 1978. In 2004, we carried out a ground survey by differential GPS in the upper- and lowermost areas of the ablation area. The amount of surface lowering was calculated by comparing digital elevation models (DEMs) with 30-m grid size, as generated from survey data corrected in 1978, 1995, and in the present study. Because we could not access the middle parts of the debris-covered area due to surface roughness, for this area we used an ASTER-DEM calibrated by the ground survey data. The amount of surface lowering during the period 1978–2004 was insignificant near the terminus. A remarkable acceleration of surface lowering was found in the middle part of the debris-covered ablation area, where the glacier surface is highly undulating. In the uppermost area, surface lowering has continued at a steady rate. Surface flow speeds have decreased since 1956, revealing that the recent decrease in ice flux from the upper accumulation area would have accelerated the rate of surface lowering of the debris-covered area of Khumbu Glacier during the period 1995–2004.