The bush stone-curlew (Burhinus grallarius Latham), a ground-nesting nocturnal bird, is endangered in southern Australia due to habitat modification and introduced predators. To provide tools for conservation, ecological and behavioural studies, we isolated variable microsatellite repeat sequences and designed primers for PCR amplification in this species. Primer pairs were developed and levels of diversity were assessed for eight microsatellite loci, including one locus linked to the gene encoding Microtubule-Associated Protein 2, a protein important for behavioural imprinting in birds, and one sex-linked locus. Isolated loci contained allelic diversity of between 5 and 17 alleles.

Interactions between humans and wildlife have increased dramatically over the past century as human populations increase and occupy areas formerly dominated by native animals. In Australia, increases in land clearing and farming close to riparian areas has brought humans into contact with the common wombat (Vombatus ursinus), a relatively large-bodied, semifossorial marsupial. The common wombat is regarded as a pest in some agricultural areas due to its habit of burrowing beneath buildings, destroying fences and destabilising stream banks. We examined the effectiveness of artificial lighting to deter wombats from using the subfloor cavity under an historic cottage at ‘Bundanon’ in southern New South Wales, Australia. The response of wombats to artificial light (10 weeks on followed by 10 weeks off) was assessed using heat- and motion-sensing cameras continuously over a period of 58 weeks. While the main focus was on light effects on wombats, the study also allowed us to record non-nuisance animals using the subfloor cavity. Of the total of 1086 animal detections over the 58-week period (2.67 detections day^–1), 965 (89%) were of mammals, 106 birds and 15 reptiles. Wombats (622; 57%) and kangaroos (228; 22%) made up 79% of all detections. Nocturnal activity of wombats remained unchanged in response to lighting (on: 266; off: 268), but there were significantly more diurnal detections when the lights were on (58) than off (30). For kangaroos, there were more nocturnal detections when lights were off, but more diurnal detections when lights were on. More antechinus were detected at night (night: 107; day: 8), and with the lights off (99 cf. 8), and insectivorous birds were detected almost entirely during the day, mostly with the lights on (66 cf. 39). Our study showed that, overall, the lighting regime we used was ineffective at reducing wombat activity under the building.

For many wildlife species only limited data are available on haematology and blood biochemistry for free-ranging populations because these are often difficult to obtain. We collected blood samples from wild adult mountain brushtail possums (Trichosurus cunninghami) in the Strathbogie Ranges, Victoria (Australia), over two years, to provide reference values for haematological and some serum biochemical parameters (serum protein, sodium, chloride, potassium, urea, creatinine, creatine kinase and cortisol) for free-ranging animals. We also investigated patterns associated with sex, season, age, habitat type and disease status, including a form of skin disease (rumpwear – one of the major diseases of brushtail possums) and parasite loads. Values for several blood parameters correlated with sex, and most also changed significantly with season. Eosinophil counts increased significantly with the number of strongyle eggs in faeces, and packed cell volume decreased significantly with increasing numbers of ticks. Surprisingly, there was a significant negative relationship between mean population serum cortisol concentrations and the prevalence of rumpwear. Serum sodium and chloride concentrations were significantly lower in possums with moderate to severe rumpwear; however, the biological significance of this is unclear. While there is a growing body of data on the blood parameters of marsupials, these are mainly derived from captive animals, or single sample sets from wild populations, thus are unlikely to accurately reflect the changing status of wild animals/populations across seasons and under varying environmental conditions and parasite loads. More comprehensive, longer-term data from free-ranging marsupial populations, such as those presented here, provide extremely important reference data to aid in determining the health status of wild populations and interpreting data collected from individuals.

The woylie (Bettongia penicillata ogilbyi) is a critically endangered small Australian marsupial that is in a state of accelerated population decline for reasons that are currently unknown. The aim of the present study was to elucidate the involvement of several viral pathogens through strategic serological testing of several wild woylie populations. Testing for antibodies against the Wallal and Warrego serogroup of orbiviruses, Macropod herpesvirus 1 and Encephalomyocarditis virus in woylie sera was undertaken through virus neutralisation tests. Moreover, testing for antibodies against the the alphaviruses Ross River virus and Barmah Forest virus and the flaviviruses Kunjin virus and Murray Valley encephalitis virus was undertaken through virus neutralisation tests and ELISA mainly because of the interest in the epidemiology of these important zoonoses as it was considered unlikely to be the cause of the decline. Between 15 and 86 samples were tested for each of the four sites in south-western Australia (Balban, Keninup, Warrup and Karakamia). Results indicated no exposure to any of the viral pathogens investigated, indicating that all populations are currently naïve and may be at risk if these pathogens were to be introduced.

Global climates are rapidly changing, which for many species will require dispersal to higher altitudes and latitudes to maintain favourable conditions. Changes in distribution for less mobile species is likely to be associated with losses to genetic diversity, yet this cannot be quantified without understanding which parts of a species distribution will colonise favourable regions in the future. To address this we adopted a realistic estimate of dispersal with predicted changes in species distributions to estimate future levels of intraspecific genetic diversity. Using 740 geckos (Gehyra variegata) collected across their distribution in central and eastern inland Australia, we predict genetic loss within phylogenetically distinct units at both mtDNA and microsatellite markers between 2010 and 2070. We found that using a quantified and realistic estimate of dispersal resulted in significant declines to allelic richness (5.114 to 4.052), haplotype richness (7.215 to 4.589) and phylogenetic diversity (0.012 to 0.005) (P < 0.01). In comparison, predicted losses were substantially over- or underestimated when commonly applied dispersal scenarios were utilised. Using biologically relevant estimates of dispersal will help estimate losses of intraspecific genetic diversity following climate change impacts. This approach will provide critical information for the management of species in the near future.

The Australian Monsoonal Tropics (AMT) are one of the largest unbroken areas of savannah woodland in the world. The history of the biota of this region is poorly understood; however, data from fossil deposits indicate that the climate was more mesic in the past, and that biodiversity has been shaped by attenuation and turnover as arid conditions expanded and intensified through the Miocene and Plio-Pleistocene. The giant cave and tree geckos (Pseudothecadactylus) are distributed across three disjunct regions of relatively high rainfall in the AMT (the north-west Kimberley, the ‘Top End’, and Cape York). We present an analysis of the diversity and biogeography of this genus based on mitochondrial (ND2) and nuclear (RAG-1) loci. These data indicate that the three widely allopatric lineages of Pseudothecadactylus diverged around the mid-Miocene, a novel pattern of relatively long-term persistence that has not previously been documented within the AMT. Two Pseudothecadactylus species endemic to sandstone scarps in the west Kimberley Region and ‘Top End’ also include divergent mitochondrial lineages, indicative of deep intraspecific coalescence times within these regions. Pseudothecadactylus is a highly relictual lineage with an extant distribution that has been shaped by a history of attenuation, isolation and persistence in the face of increasingly arid conditions. The low ecological and morphological diversity of Pseudothecadactylus also contrasts with its diverse sister lineage of geckos in New Caledonia, further underlining the relictual nature of standing diversity in the former.

Tawny frogmouth (Podargus strigoides) nests were surveyed in grassy woodland, dry sclerophyll forest and suburbia in the Australian Capital Territory. In total, 253 tawny frogmouth nests were recorded in 145 nest sites. Nests were oriented to the north-east, which would expose them to morning sunshine and partially shelter them from the prevailing wind. Most nests were placed in rough or flaky-barked tree species, on open mid-branch sites with no foliage, where the birds’ plumage and posture resemble the colour and form of the branches. Although smooth-barked gum trees were the most abundant types in the dry sclerophyll forest they were seldom used. Nest sites in all habitats were similar; the mean nest height was 9.2 m, and most nests were set on forks in the lowest branches. By placing their nests in these positions tawny frogmouths likely maximise their potential thermoregulation, protection from wind, concealment from predators, and detection of approaching predators.

Here, we describe the development of seven new microsatellite loci from Petaurus breviceps. Together with eight loci from previous studies of gliders, we tested their utility for amplification, multiplexing and polymorphism in two glider species, P. breviceps and P. norfolcensis. Of the 15 loci tested, all were polymorphic in P. breviceps and 12 were polymorphic in P. norfolcensis. Overall, 260 sugar gliders from 13 sites in south-eastern South Australia and 106 squirrel gliders collected throughout south-east Queensland were used in analyses. Numbers of alleles per locus ranged from 4 to 27 in P. breviceps and from 2 to 44 in P. norfolcensis. Observed heterozygosity ranged between 0.438 and 0.904 in P. breviceps and between 0.189 and 0.981 in P. norfolcensis. Within the populations analysed, one of the 15 loci for P. breviceps and two of the 12 loci for P. norfolcensis deviated from Hardy–Weinberg equilibrium. The microsatellite loci will provide valuable tools for further study of social organisation, mating systems and population biology of these gliding marsupials.