Southern Florida's Everglades are at the front line of potential negative effects on aquatic ecosystems from climate change and associated sea-level rise. A diversity of aquatic habitats supports a rich assemblage of aquatic and terrestrial wildlife, including 36 vertebrates and 26 plant species federally listed as endangered, threatened, or candidate species. Anticipated climate-change trends for southern Florida include increased weather uncertainty with more droughts, higher temperatures, and an increased number of more intense storms. Hydrologic regimes, temperature, and CO₂ have been strongly correlated with plant community structure, coral and fish abundance and diversity, and higher trophic-level responses. Higher levels of variability in extreme climatic events, such as droughts, have the potential to destabilize aquatic communities. Sea-level rise is expected to be 0.8 to 2 m over the next century, a serious problem in a landscape that rises only 5 cm/km from Florida Bay inland. Wading birds and other wildlife species dependent on fresh water are likely to decline because of salt-water overwash and inundation. In addition to causing habitat loss, saltwater inundation of the peat substrate of Everglades freshwater wetlands may increase C emissions from sequestered C released as peat is destroyed and freshwater plant communities die. Identification of those species and habitats most at risk and ways to increase habitat and landscape resilience to large-scale environmental change will be critical for maintaining a diverse and productive Everglades.