Previous work during a major sediment resuspension event (March 1988) in southern Lake Michigan demonstrated that nutrients and carbon derived from resuspended sediment stimulated intense winter heterotrophic production while simultaneously decreasing light availability and autotrophic biomass. However, the role of riverine inputs on plankton metabolism remained unclear. Here we present results from a simulated enrichment experiment (March 2000) designed to examine the influence of resuspended sediments and riverine inputs on Lake Michigan plankton dynamics. Lake water amended with realistic levels of river water, coastal resuspended sediment and river water sediment all showed enhanced heterotrophic bacterial production and plankton respiration rates, relative to the lake water control. Bacterial production increased by approximately 4× in river water treatments and by a factor of 2.5× for the sediment only treatment compared to lake water controls. Rates of net primary production were stimulated by river water (8.5×) and resuspended sediment (3×), but most by a combination of river water sediments (11×). Community respiration showed a similar response with rates approximately 8× higher in river water amendment treatments and 3.5× higher in the sediment treatment. Extrapolating experimentally determined production rates to the southern Lake Michigan basin indicated that heterotrophic and autotrophic production in this nearshore region may be enhanced by as much as 3× and 5.2× due to these source inputs. Indeed, field measurements throughout southern Lake Michigan from 1998–2000 support these experimental results. Experimental and field observations suggest that both seasonal riverine inputs and episodic resuspended sediments influence the regional scale ecosystem metabolism and biogeochemistry in Lake Michigan.

Escherichia coli and fecal coliform bacteria were isolated from five benthic and four pelagic fish species to determine their role in the fecal contamination of recreational waters. All fish were collected during fall 2006 from Southworth Marsh in the Duluth-Superior Harbor, a public beach that is commonly posted to minimize water contact due to high E. coli levels. Although fecal coliform bacteria were isolated from each fish species, they were only isolated from 66% and 72% of the individual benthic and pelagic fish, respectively. While 42% of the fecal coliforms from benthic fish were E. coli, only 4% of these bacteria from pelagic fish were E. coli. Cluster analysis showed different fish species harbored identical strains of E. coli and some fish contained multiple E. coli strains. The potential source for 65% of the E. coli isolates obtained from fish were identified by using the HFERP DNA fingerprinting method and libraries of E. coli DNA fingerprints from warm-blooded animals and environmental isolates collected in the area. The E. coli strains whose source could be identified were most similar to strains isolated from sediments, Canada geese, mallard ducks, and wastewater. None of the fish E. coli had DNA fingerprints matching those from any water or beach sand isolates. Although our results demonstrate that benthic fish contain E. coli, it may be more appropriate to consider these fish as a vector of E. coli from other sources, rather than a new source of E. coli contamination in aquatic environments.

In the mid 1990s, growth and condition of lake whitefish (Coregonus clupeaformis) declined within commercial catches in Lake Michigan. However, underlying mechanisms responsible for the declines have not been thoroughly explored. Using fishery-independent survey data, we examined growth and relative abundance of adult whitefish over historical (1980–1990) and recent (1996–2005) time periods in three regions of Lake Michigan: north, mid, and south. Relative abundance was assessed from catch-per-unit-effort (CPUE) of independent surveys, and changes in growth conditions were evaluated using size-at-age estimates. Relative abundance increased in the mid and south regions between the two time periods and decreased in the north region. Length-at-age significantly declined between the two time periods in the north, mid, and south regions; the north region consistently had the lowest length-at-age. Condition also declined between the two time periods in each region. The decline in growth and condition coupled with increases in relative abundance suggest density-dependent mechanisms are contributing to the observed population changes in the south region. The north region does not appear to be regulated by density, suggesting density-independent mechanisms, such as food web changes, are influencing stocks. Changes in the mid region are likely from a mixture of increased lake whitefish abundance and food web changes. Using fishery-independent population data, our results suggest that multiple factors are potentially contributing differentially within three Lake Michigan regions to cause similar declines in length-at-age and condition of whitefish. These factors (e.g., food web changes, lake whitefish density) should be considered when managing the commercial fishery.

To improve our ability to assess larval cisco (Coregonus artedi) populations in Lake Superior, we conducted a study to compare several sampling strategies. First, we compared density estimates of larval cisco concurrently captured in surface waters with a 2 ×1-m paired neuston net and a 0.5-m (diameter) conical net. Density estimates obtained from the two gear types were not significantly different, suggesting that the conical net is a reasonable alternative to the more cumbersome and costly neuston net. Next, we assessed the effect of tow pattern (sinusoidal versus straight tows) to examine if propeller wash affected larval density. We found no effect of propeller wash on the catchability of larval cisco. Given the availability of global positioning systems, we recommend sampling larval cisco using straight tows to simplify protocols and facilitate straightforward measurements of volume filtered. Finally, we investigated potential trends in larval cisco density estimates by sampling four time periods during the light period of a day at individual sites. Our results indicate no significant trends in larval density estimates during the day. We conclude estimates of larval cisco density across space are not confounded by time at a daily timescale. Well-designed, cost effective surveys of larval cisco abundance will help to further our understanding of this important Great Lakes forage species.

Round gobies (Neogobius melanostomus) were introduced to the Great Lakes presumably as a result of ballast water releases from seagoing freighters returning from European water bodies. These unwelcome fish have become established in the Great Lakes region and are expanding their range to suitable portions of other interior drainage basins including the Mississippi River traversing the central United States and the Trent-Severn waterway spanning south-central Ontario. If the invasion continues, use of chemical toxicants as a control measure may be necessary. Toxicity tests of the currently registered piscicides antimycin, rotenone, 3-trifluoromethyl-4-nitrophenol (TFM), and Bayluscide® were conducted with three fish species native to the Great Lakes and round gobies collected from the Illinois Waterway. Tests indicated that round gobies are sensitive to all of the piscicides, however, the level of sensitivity is similar to that of the native fish species tested. Therefore, currently registered piscicides have limited potential to selectively remove round gobies. Bottom-release formulations of Bayluscide® and antimycin were also evaluated as control agents for the normally bottom-dwelling round goby. Avoidance behavior tests demonstrated that the round goby did not react to the presence of either chemical. Therefore, the bottom-release formulations may have some application for the selective removal of round gobies, and may be one of the few tools presently available to fishery managers to help limit the range expansion of this invasive fish.

In 2004, we revisited a Michigan stream invaded by rusty crayfish (Orconectes rusticus) to determine if this species continued to expand its downstream range and negatively impact the stream food web. Compared to a 1992 study, we predicted that rusty crayfish would increase in density and downstream distribution from a small lake, resulting in further reduction of in-stream resources such as organic matter, benthic invertebrates, and periphyton. To determine current crayfish distributions and impacts, we conducted a longitudinal survey of crayfish abundance, ran a 28-d leaf breakdown experiment, and sampled benthic substrates. Leaf packs of sugar maple (Acer saccharum) leaves were placed at three sites with differing crayfish densities (high, intermediate, and none). Breakdown rates were compared across the three sites and for two treatments (closed leaf bags excluding crayfish and open bags allowing crayfish access). Benthic invertebrates were sampled from leaf bags and invertebrates and periphyton were sampled from cobbles. In contrast to 1992, we found that the maximum downstream distance of rusty crayfish declined from 4 km to less than 3 km downstream from the lake. Leaves in open bags decayed significantly faster (k = 0.143) than did leaves in closed bags at all sites (k = 0.079) (p = 0.0005). The site lacking crayfish had significantly higher densities of invertebrates compared to both high and intermediate crayfish density sites (p = 0.005). Although we found that rusty crayfish reduced standing stocks of leaves and invertebrates, we did not detect measurable changes in periphyton biomass. Therefore, rusty crayfish have not dispersed further downstream since 1992, but where present, these omnivores significantly reduce resource availability via the consumption of leaf material and benthic invertebrates.

The siscowet Salvelinus namaycush is a deepwater morphotype of lake trout in Lake Superior. As part of a standardized lake-wide survey in 2006 to assess siscowet populations, bottom-set, multi-mesh gill nets were fished at 36.6 m depth intervals from near shore areas to the deepest waters in south-central Lake Superior. Siscowet length distributions, diet compositions, and sea lamprey wounding rates were compared for three depth zones: shallow (< 200 m), deep (200–394 m), and deepest (395–399 m). There were 39 siscowets collected in proximity to Lake Superior's greatest recorded depth of 405 m. To our knowledge, this is the greatest depth that fish have been collected in the Great Lakes. Higher proportions of siscowets ≤ 500 mm were caught in the shallow zone compared to deeper zones. Deepwater sculpins were the dominant prey for small siscowets (< 600 mm) across all depth zones. The diet of large siscowets (≥ 600 mm) among all depth zones comprised mostly of coregonines and burbot Lota lota. Terrestrial insects were observed in the diet of siscowets in all depth zones, indicating migration to the surface. Type A sea lamprey wounding rates were higher for large (≥ 600 mm) than small siscowets among all depth zones. The highest wounding rate was observed on large siscowets in the deep zone. Recent work indicates that siscowets are the most abundant lake trout form and this research indicates that siscowets use the maximum depths of Lake Superior.

Our objective was to evaluate the status of lake trout Salvelinus namaycush rehabilitation in South Bay, Lake Huron. Standardized surveys were conducted to quantify natural recruitment, annual mortality, and the contribution of wild- versus hatchery-origin lake trout. Some indicators suggest a high level of natural recruitment. The spawning population was comprised of multiple ages, and the mean age of spawners (8.4 years for females, 7.9 years for males) was at least 1 year older than the age at 50% maturity (5.8 years). Estimated annual total mortality rates (0.20–0.25) and sea-lamprey induced mortality rates (0.02) were less than maximum allowable values. The proportion of wild-origin fish captured was high among spawners but varied among sampling programs (42% in fall trap nets, 70% in fall gill nets, and 88% in summer gill nets). A strong year class (1997) could be tracked from 2001 to 2005. Few fish were captured from early (< 1996) or later (1999–2002) year classes. Possible explanations for low natural recruitment during these later years include declining spawning habitat quality caused by low water levels and/or invasion of non-native mussels (Dreissena spp.) and/or direct or indirect effects of alewife (Alosa pseudoharengus).

Photointerpretation studies were conducted to evaluate vegetation changes in wetlands of Lake Ontario and the upper St. Lawrence River associated with regulation of water levels since about 1960. The studies used photographs from 16 sites (four each from drowned river mouth, barrier beach, open embayment, and protected embayment wetlands) and spanned a period from the 1950s to 2001 at roughly decadal intervals. Meadow marsh was the most prominent vegetation type in most wetlands in the late 1950s when water levels had declined following high lake levels in the early 1950s. Meadow marsh increased at some sites in the mid-1960s in response to low lake levels and decreased at all sites in the late 1970s following a period of high lake levels. Typha increased at nearly all sites, except wave-exposed open embayments, in the 1970s. Meadow marsh continued to decrease and Typha to increase at most sites during sustained higher lake levels through the 1980s, 1990s, and into 2001. Most vegetation changes could be correlated with lake-level changes and with life-history strategies and physiological tolerances to water depth of prominent taxa. Analyses of GIS coverages demonstrated that much of the Typha invasion was landward into meadow marsh, largely by Typha × glauca. Lesser expansion toward open water included both T. × glauca and T. angustifolia. Although many models focus on the seed bank as a key component of vegetative change in wetlands, our results suggest that canopy-dominating, moisture-requiring Typha was able to invade meadow marsh at higher elevations because sustained higher lake levels allowed it to survive and overtake sedges and grasses that can tolerate periods of drier soil conditions.

Laurentian Great Lakes beach fish assemblages and the factors influencing their composition have been rarely investigated. In this study, we investigated whether north shore Lake Erie beach fish assemblages, and the distribution of the channel darter (Percina copelandi), a threatened species in Canada, have changed since the late 1940s. Over this time period, Lake Erie has been severely altered by the combined effects of eutrophication, overexploitation of fishery resources, habitat degradation, and invasive species. Seining data from 34 north shore beach sites indicate that a large decline in species richness has occurred, and that several introduced species are present. Three fishes of federal conservation concern and four species of recreational and commercial importance, previously captured from central and eastern Lake Erie basin beaches, were absent. This included the channel darter, which was collected from only one of six historical collection sites, indicating a substantial decline in its Lake Erie distribution. Potential causes of this decline include eutrophication-induced ecosystem changes, the effect of extensive shoreline modification on beaches, and the invasive round goby (Neogobius melanostomus). Nearshore bottom trawls of Long Point Bay indicate that, since the establishment of round goby, concurrent short-term declines in the abundance of two other native benthic fishes (johnny darter Etheostoma nigrum, and logperch P. caprodes) have occurred.

We report the first records of Amur goby, Rhinogobius lindbergi and the Chinese false gudgeon, Abbottina rivularis from the Lake Buyr drainage of eastern Mongolia. Both species were previously known only from much farther downstream in the Amur River basin. Because of their abundance at three sites separated by 11 km in Lake Buyr and a tribuary stream, and presence of multiple size classes, we strongly suspect that these species are established. Both species have been widely dispersed outside of the Amur River basin as contaminants in cultured, large-bodied cyprinids (Ctenopharyngodon, Hypophthalmichthys, Parabramis), and we suggest that this is the most likely means of their introduction into Lake Buyr. The long-term impacts of these species on the native ichthyofauna are unknown, but unlikely to be positive. We suggest that immediate measures be taken to monitor their dispersal, and to prevent similar introductions in the future.

Prior studies recognized the presence of a single dreissenid species in Lake Superior—the zebra mussel Dreissena polymorpha. However, taxonomic keys based on traditional shell morphology are not always able to differentiate dreissenid species with confidence. We thus employed genetic and morphological analyses to identify dreissenids in a major river-embayment of Lake Superior—the lower St. Louis River/Duluth-Superior Harbor—during 2005–2006. Our results revealed the presence of a second dreissenid species—the quagga mussel D. bugensis (alternatively known as D. rostriformis bugensis). Both species occurred in mixed clusters, in which zebra mussels outnumbered quagga mussels (20–160:1). The largest quagga mussel collected in 2005 was 26.5 mm long and estimated to be two years old, suggesting that the initial introduction occurred no later than 2003. Further monitoring is necessary to determine whether the quagga mussel will colonize Lake Superior. Our results indicate that the coupling of conventional morphological and molecular approaches is essential for monitoring dreissenid species.

We used Great Lakes hydrologic data and bird monitoring data from the Great Lakes Marsh Monitoring Program from 1995–2002 to: 1) evaluate trends and patterns of annual change in May–July water levels for Lakes Ontario, Erie, and Huron-Michigan, 2) report on trends of relative abundance for birds breeding in Great Lakes coastal marshes, and 3) correlate basin-wide and lake-specific annual indices of bird abundance with Great Lakes water levels. From 1995–2002, average May, June, and July water levels in all lake basins showed some annual variation, but Lakes Erie and Huron-Michigan had identical annual fluctuation patterns and general water level declines. No trend was observed in Lake Ontario water levels over this period. Abundance for five of seven marsh birds in Lake Ontario wetlands showed no temporal trends, whereas abundance of black tern (Chlidonias niger) declined and that of swamp sparrow (Melospiza georgiana) increased from 1995–2002. In contrast, abundances of American coot (Fulica americana), black tern, common moorhen (Gallinula chloropus), least bittern (Ixobrychus exilis), marsh wren (Cistorthorus palustris), pied-billed grebe (Podilymbus podiceps), sora (Porzana carolina), swamp sparrow, and Virginia rail (Rallus limicola) declined within marshes at Lakes Erie and Huron/Michigan from 1995–2002. Annual abundances of several birds we examined showed positive correlations with annual lake level changes in non-regulated Lakes Erie and Huron/Michigan, whereas most birds we examined in Lake Ontario coastal wetlands were not correlated with suppressed water level changes of this lake. Overall, our results suggest that long-term changes and annual water level fluctuations are important abiotic factors affecting abundance of some marsh-dependent birds in Great Lakes coastal marshes. For this reason, wetland bird population monitoring initiatives should consider using methods in sampling protocols, or during data analyses, to account for temporal and spatial components of hydrologic variability that affect wetlands and their avifauna.

The shoreline and sublittoral areas of Lake Simcoe were surveyed in October 2005 as part of a baseline inventory of current conditions, and as part of an exploratory analysis to determine if there were threshold nutrient levels above which nutrients were a major controlling factor in the distributions (abundances) of benthic organisms. Along the shore environment, there was no generalized relationship between nutrients and indices of benthic community composition below water-borne total phosphorus concentrations of ~ 0.05 mg/L, indicating that other factors were more important at those lower levels of phosphorus. Benthic community composition did not vary with water quality in the sublittoral zone, but did vary with sediment quality (total Kjeldahl nitrogen, total phosphorus). The benthic community had higher relative abundances of caddisflies and mayflies at sublittoral stations with TKN levels at or near the provincial low-effect level of 550 mg/kg, and had higher relative abundances of more tolerant taxa such as worms, amphipods, and snails at locations with TKN levels in excess of the provincial severe-effect level of 4,800 mg/kg. The relationship between composition and TKN in sediments was not obvious below concentrations of ~ 300 mg/kg, indicating that other factors were more important at those levels of TKN. This study was the first to document an inland (non-Great Lake) colonization by the exotic amphipod Echinogammarus ischnus. This species was found along most of the shoreline with the exception of shorelines within Cook's Bay, along Sibbald Point Provincial Park and at the far end of Kempenfelt Bay. Where found, E. ischnus were generally numerically dominant members of the benthic community.

E. coli is an indicator of recent fecal contamination of freshwater beaches around the Great Lakes region. Elevated concentrations indicate that a fecal contamination has occurred, and that the risk for contact with fecal pathogenic organisms is heightened. The green algae, Cladophora, harbors populations of E. coli and potentially allows for prolonged survival and even replication of the bacterium in the lake environment. If presence of Cladophora mats on beaches is associated with persistence of E. coli in beach water, then E. coli would be a useful indicator organism only if pathogens also were able to survive and persist in the algae. This study utilized lab microcosms to study the persistence of E. coli, and of the fecal pathogens, Salmonella and Shigella, in lake water with and without the presence of Cladophora. E. coli was able to persist for extended periods in the presence of Cladophora (attached to algal mats for 45 days). Salmonella and Shigella, however, were unable to persist for this time period while in the presence of Cladophora (Salmonella attached to Cladophora was detectable for 10 days and Shigella was detectable for only 2 days). These data imply that E. coli is able to survive in the presence of Cladophora for greater times than are the fecal pathogens and that E. coli may not be an appropriate indicator organism for beaches with accumulations of algal material.