Skrjabingylus santaceciliae n. sp. is described based on specimens from the frontal sinuses of a hooded skunk, Mephitis macroura, collected from the Area de Conservación Guanacaste, Costa Rica. Skrjabingylus santaceciliae n. sp. differs from the other 5 species in the genus in having pointed spicule tips that lack a rounded or lobed formation and by lacking a prominent distal projection at the tail tip. Morphometric comparisons show that S. santaceciliae n. sp. is much smaller than the only other valid species from Mephitis, Skrjabingylus chitwoodorum Hill, 1939. Likewise, morphometric comparisons also distinguish S. santaceciliae n. sp. from other described Skrjabingylus species.