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Applications in Plant Sciences
VOL. 4 · NO. 7 | July 2016
 
IN THIS ISSUE
PRIMER NOTES (6)
SOFTWARE NOTES (2)
GENOMIC RESOURCES NOTES (1)
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PRIMER NOTES
Development of 18 Novel Microsatellite Primers for Begonia fimbristipula (Begoniaceae), an Endangered Medicinal Plant in China
Bo Zhao, Yun-Qian Du, Jing-Jian Li, Wen-Xiu Tang, Shu-Hua Zhong
Applications in Plant Sciences 4 (7), (13 July 2016) https://doi.org/10.3732/apps.1600004 Open Access
KEYWORDS: Begonia fimbristipula, Begoniaceae, conservation, microsatellite markers
No abstract available
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Development of EST-SSR Markers for the Invasive Plant Tithonia diversifolia (Asteraceae)
Landi Luo, Pin Zhang, Xiaokun Ou, Yupeng Geng
Applications in Plant Sciences 4 (7), (12 July 2016) https://doi.org/10.3732/apps.1600011 Open Access
KEYWORDS: Asteraceae, EST-SSR, invasive species, Tithonia diversifolia, transcriptome sequencing
No abstract available
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Characterization of Polymorphic Microsatellite Markers for Primula sikkimensis (Primulaceae) Using a 454 Sequencing Approach
Chang-Han Li, Yun-Jiao Liu, Cai-Yun Zhang, Hai-Fei Yan, Xue-Jun Ge, Gang Hao
Applications in Plant Sciences 4 (7), (6 July 2016) https://doi.org/10.3732/apps.1600015 Open Access
KEYWORDS: cross-amplification, deep lineage divergence, genetic introgression, microsatellites, Primula sikkimensis, Primulaceae
No abstract available
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SOFTWARE NOTES
HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment
Matthew G. Johnson, Elliot M. Gardner, Yang Liu, Rafael Medina, Bernard Goffinet, A. Jonathan Shaw, Nyree J. C. Zerega, Norman J. Wickett
Applications in Plant Sciences 4 (7), (12 July 2016) https://doi.org/10.3732/apps.1600016 Open Access
KEYWORDS: bioinformatics, Hyb-Seq, phylogenomics, sequence assembly
No abstract available
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GENOMIC RESOURCES NOTES
Low-Coverage, Whole-Genome Sequencing of Artocarpus camansi (Moraceae) for Phylogenetic Marker Development and Gene Discovery
Elliot M. Gardner, Matthew G. Johnson, Diane Ragone, Norman J. Wickett, Nyree J. C. Zerega
Applications in Plant Sciences 4 (7), (13 July 2016) https://doi.org/10.3732/apps.1600017 Open Access
KEYWORDS: Artocarpus camansi, breadfruit, breadnut, genome, MADS box, MORACEAE
No abstract available
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PRIMER NOTES
Development of Polymorphic Microsatellite Markers for Japanese yew, Taxus cuspidata, and T. cuspidata var. nana (Taxaceae)
Toshiaki Kondo
Applications in Plant Sciences 4 (7), (7 July 2016) https://doi.org/10.3732/apps.1600020 Open Access
KEYWORDS: Gymnosperm, microsatellite, molecular marker, Taxaceae, Taxus cuspidata
No abstract available
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Development of Microsatellite Markers for Crepis mollis (Asteraceae)
Virginia K. Duwe, Ludo A. H. Muller, Thomas Borsch, Sascha A. Ismail
Applications in Plant Sciences 4 (7), (7 July 2016) https://doi.org/10.3732/apps.1600022 Open Access
KEYWORDS: Asteraceae, Crepis mollis, Illumina, microsatellites, population genetics
No abstract available
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Microsatellite Development for the Genus Guibourtia (Fabaceae, Caesalpinioideae) Reveals Diploid and Polyploid Species
Felicien Tosso, Jean-Louis Doucet, Esra Kaymak, Kasso Daïnou, Jérôme Duminil, Olivier J. Hardy
Applications in Plant Sciences 4 (7), (13 July 2016) https://doi.org/10.3732/apps.1600029 Open Access
KEYWORDS: FABACEAE, flow cytometry, Guibourtia, microsatellites, next-generation sequencing, polyploidy
No abstract available
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SOFTWARE NOTES
ColectoR, a Digital Field Notebook for Voucher Specimen Collection for Smartphones
Carlos A. Maya-Lastra
Applications in Plant Sciences 4 (7), (12 July 2016) https://doi.org/10.3732/apps.1600035 Open Access
KEYWORDS: botany app, database, fieldwork, herbarium labels, plant collection, smartphone app
No abstract available
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