The White-tailed Eagle Haliaeetus albicilla may aggregate in areas with high fish supply during their autumn movements. Here, we report on data collected between 2008 and 2019 concerning numbers of White-tailed Eagles visiting fishponds located in NE Lithuania, to the east of the Baltic Sea during the autumn months. For comparison, between 2016 and 2018 we also surveyed White-tailed Eagles at another, similarly managed fishpond, located 110 km away in SE Lithuania. The number of White-tailed Eagles at the fishponds in NE Lithuania in October through December increased nearly three-fold between 2008 and 2019. The long-term increase occurred especially in November–December and much less in October, and this, together with sudden increases in numbers in certain years, suggests possible changes in their movement patterns. We found similar numbers of assembling eagles in the two fishponds in October, but in November there were significantly more eagles at the fishponds in NE Lithuania. The size of groups in autumn and the seasonal dynamics therein may differ at different stopover sites that are similar in size, harvesting practice and located in the same region. We suggest this could be due to differences in the surrounding environment.