Asplenium listeri C.Chr. has been considered endemic to Christmas Island and is one of only two fern species listed as Critically Endangered under Australia’s Environment Protection and Biodiversity Conservation Act. Its status as a distinct species has been questioned because of morphological similarity to the widespread A. polyodon G.Forst., which also occurs on Christmas Island. Molecular analyses revealed that A. listeri and plants attributed to A. polyodon from coastal limestone in New Caledonia and Vanuatu share the same rbcL, trnL–trnF and rps4–trnS haplotype and that other samples of A. polyodon in Australia and the south-western Pacific belong to three separate molecular lineages. One of these lineages is formed by epiphytic A. polyodon from Christmas Island and has a chloroplast haplotype closely related to that of A. listeri, differing by four mutations. The A. listeri haplotype and each of the three A. polyodon lineages are associated with morphological characters and are all worthy of recognition as separate species. Asplenium listeri is here expanded to include limestone dwelling populations in the Pacific previously assigned to A. polyodon. This greatly extends the geographic range of A. listeri, and its conservation status should be revised accordingly. Application of correct names to all species in the A. polyodon complex requires further molecular sampling throughout its geographic range and clarification of how type material relates to each of the molecular groups.