Homegardens may serve as reservoirs of agro-biodiversity on highly fertile, anthropogenic Amazonian Dark Earth (ADE) soils of the Amazon basin. However, as these soils are used more intensively for market-oriented agriculture, we suspected a decrease in their agro-biodiversity. We present data obtained from surveys on 16 farms where ADE was present in the region of Manaus, Amazonas, Brazil. When farms were separated into two groups by market orientation, species richness on the farms was not significantly influenced by market orientation, but there was less dominance (i.e., more diversity) for homegardens in the low-market orientation group (P < 0.1). The proportion of native species was not affected by market orientation. Hence, while the most market-oriented farms retained high species richness, homegardens located on them contained higher proportions of commercially interesting species.