We estimated the prevalence, intensity, and abundance of swimbladder nematode infection in 1281 lake whitefish (Coregonus clupeaformis) collected from four sites in northern lakes Huron (Cheboygan and DeTour Village) and Michigan (Big Bay de Noc and Naubinway) from fall 2003 through summer 2006. Morphological examination of nematode egg, larval, and mature stages through light and scanning electron microscopy revealed characteristics consistent with that of Cystidicola farionis Fischer 1798. Total C. farionis prevalence was 26.94%, while the mean intensity and abundance of infection was 26.72 and 7.21 nematodes/fish, respectively. Although we detected C. farionis in all four stocks that were examined, Lake Huron stocks generally had higher prevalence, intensity, and abundance of infection than Lake Michigan stocks. A distinct seasonal fluctuation in prevalence, abundance, and intensity of C. farionis was observed, which does not coincide with reported C. farionis development in other fish species. Lake whitefish that were heavily infected with C. farionis were found to have thickened swimbladder walls with deteriorated mucosa lining, which could affect swimbladder function. Whether C. farionis infection may be negatively impacting lake whitefish stocks in the Great Lakes is unclear; continued monitoring of C. farionis infection should be conducted to measure responses of lake whitefish stocks to infection levels.