Culicoides Latreille (Diptera: Ceratopogonidae) biting midges are hematophagous flies that can transmit several disease-causing pathogens to animals. Surveillance of Culicoides is important for understanding pathogen transmission risk. The most commonly used traps for midge surveillance are suction traps baited with UV light or CO₂. Culicoides species are understudied in the southern California desert region and trapping methods for these desert midges remain largely unexplored. In this study, capture rates of different Culicoides species were compared using suction traps baited with either UV or CO₂ placed at two locations at a southern California desert site where a narrow canyon (Deep Canyon) drains the adjacent peninsular mountain range and leads to an expansive floodplain. Over all trap nights and locations, UV-baited traps outperformed CO₂-baited traps for most Culicoides species captured at the study site, except for Culicoides sonorensis Wirth and Jones and C. mohave Wirth. Capture rates varied for each species by trap location, with desert Culicoides species captured in greater numbers at the canyon mouth while C. sonorensis and C. mohave were captured in greater numbers on the floodplain nearer to urban development including a golf course and small zoo. An interaction of trap type with trapping location on the capture rate was noted for some Culicoides species, especially for C. mohave which was captured in greater numbers using UV traps at the canyon mouth but captured in greater numbers using CO₂ traps in the floodplain. This trap efficiency study will facilitate future research targeting Culicoides species in the southern California desert.