Aquatic food webs use C derived from 2 sources: autochthonous (derived from inside the water body) and allochthonous (derived from outside the water body). Various autochthonous sources are available to consumers (e.g., algae, mosses, macrophytes), and stable isotope analysis can be used to differentiate among C sources and to determine which sources sustain aquatic communities. The goal of our study was to determine which C sources contribute to the autochthonous pathways in 2 oligotrophic rivers, the Upper Salmon and Big Salmon, in New Brunswick (Canada). Samples were taken from headwaters to river mouth (above head of tide) at 17 study sites distributed across subbasins and stream orders. Vegetation samples included macrophytes, filamentous algae, biofilm, and aquatic bryophytes. Macroinvertebrate taxa in the scraper (grazer) functional feeding group were collected to represent primary consumers that feed primarily on autochthonous food sources. Macrophyte and cyanobacteria δ¹³C values were correlated with scraper δ¹³C values (r  =  0.55 and 0.47, respectively), but δ¹³C of most scrapers was more depleted than δ¹³C of these food sources (>40% and >90%, respectively). Trophic fractionation is primarily an enrichment process, so these results indicated that macrophytes and cyanobacteria were not important food sources for primary consumers. Filamentous algae and biofilm δ¹³C values were poorly correlated with scraper δ¹³C values (r  =  0.36 and 0.40, respectively), and >60% of the values were too depleted for these sources to be important food sources for scrapers. Ninety-eight percent of scraper δ¹³C values were enriched relative to bryophyte δ¹³C values, and bryophyte δ¹³C values were correlated with scraper δ¹³C values (r  =  0.53), particularly when samples from slow-flowing habitats were removed from the analysis (r  =  0.76). Spatial distributions of 2 important bryophyte taxa differed. Fontinalis sp. was abundant in headwater streams, and Drepanocladus sp. was abundant in low-order streams. Scrapers in low-order streams seemed to depend more on Fontinalis sp. than scrapers in high-order streams depended on Drepanocladus sp. Our results suggest that in low-productivity, nutrient-limited rivers, reduced availability of more preferred food sources (e.g., epilithic algae) might cause primary consumers to switch to marginal food sources, such as bryophytes. Further research is required to confirm this hypothesis and to eliminate confounding factors.