The above noted paper is being officially retracted as a publication in the Ornithology.

The rails (Family Rallidae) are the most diverse and widespread group in the Gruiformes. Their extensive fossil history, global geographic distribution, and tendency to rapidly evolve flightless species on islands make them an attractive subject of evolutionary studies, but the rarity of modern museum specimens of so many rail species has, until recently, limited the scope of molecular phylogenetics studies. As a result, the classification of rails remains one of the most unsettled among major bird radiations. We extracted DNA from museum specimens of 82 species, including 27 from study skins collected as long ago as 1875, and generated nucleotide sequences from thousands of homologous ultra-conserved elements (UCEs). Our phylogenetic analyses, using both concatenation and multispecies coalescent approaches, resulted in well-supported and highly congruent phylogenies that resolve the major lineages of rails and reveal several currently recognized genera to be polyphyletic. A fossil-calibrated time tree is well-resolved and supports the hypothesis that rails split into 2 major lineages (subfamilies Himantornithinae and Rallinae) ∼34 mya, but clade age estimates have wide confidence intervals. Our results, combined with results of other recently published phylogenomics studies of rails and other Gruiformes, form the basis for a proposed classification of the Rallidae that recognizes 40 genera in 9 tribes.

Seasonal migration is intrinsically connected to the balance of survival and reproduction, but whether migratory behavior influences species' position on the slow-fast continuum of life history is poorly understood. We found that boreal-breeding birds that migrate long distances exhibit higher annual adult survival and lower annual reproductive investment relative to co-distributed boreal species that migrate shorter distances to winter closer to their breeding grounds. Our study uses “vital rates” data on reproductive output and survivorship compiled from the literature for a species assemblage of 45 species of mostly passerine birds. These species breed sympatrically in North American boreal forests but migrate to a diversity of environments for the northern winter. After controlling for body size and phylogeny, migration distance and apparent annual adult survival are positively related across species. Both migration distance and survival are positively correlated with wintering in environments that are warmer, wetter, and greener. At the same time, longer migrations are associated with reduced time spent on the breeding grounds, lower clutch sizes, and lower fecundity (clutch size × maximum number of broods per year). Although seasonal migration is often associated with high mortality, our results suggest that long-distance migration imposes selection pressures that both confer and demand high adult survival rates. That is, owing to the reproductive cost of long-distance migration, this strategy can only persist if balanced by high adult survival. Our study supports the idea that migration evolves to promote survival of species breeding in seasonal environments. In boreal birds, the evolution of the longest migrations yields the highest survival, but at an inherent cost to annual fecundity. Our results therefore reveal migratory distance as a fundamental axis of the slow-fast continuum that predicts, and is inextricable from, the balance of survival and reproduction.

Large body size is an important determinant of individual fitness in many animal species, especially in island systems where habitat saturation may result in strong intraspecific competition for mates and breeding territories. Here we show that large body size is associated with benefits to yearling breeding and extra-pair mating in the Island Scrub-Jay (Aphelocoma insularis), endemic to Santa Cruz Island, California. This species is ∼20% larger than its mainland congener, consistent with the island syndrome, indicating that body size may be a trait under selection. From 2009 to 2013, we quantified the reproductive success of a marked population of Island Scrub-Jays, tracked which yearlings acquired a breeding territory and bred, and measured the occurrence of extra-pair paternity. Two potential contributors to fitness were positively related to body size. Larger yearling males were more likely to breed, possibly due to greater behavioral dominance during aggressive encounters. Larger males were also less likely to lose paternity to extra-pair males and, anecdotally, extra-pair males were larger than the social male cuckolded. This study provides evidence that larger males may have a fitness advantage over smaller males by breeding earlier and avoiding paternity loss, but estimates of lifetime reproductive success are ultimately needed for Island Scrub-Jays and other long-lived species.

We investigated whether context-specific behavior is responsible for the cohesion of mixed-species flocks of antshrikes and antwrens in Amazonian Peru. Antshrikes perform a behavior while spatially repositioning, to which antwrens respond by approaching. The cohesion of interspecific associations requires communication, although the mechanisms often are unexplored. In monospecific groups, cohesion among individuals is maintained with actions or vocalizations given in a certain context. Dusky-throated Antshrikes (Thamnomanes ardesiacus) vocalize while in flight and the number of times they vocalize covaries with the flight distance. We refer to this pairing of flight and vocalization as repositioning behavior. Furthermore, antshrikes pair a different call type with perching, which we refer to as perching behavior. We followed Long-winged (Myrmotherula longipennis) and White-flanked Antwrens (M. axillaris) and recorded their response following natural vocalizations (no playback used) given by the antshrikes. Long-winged Antwrens, but not White-flanked, flew toward an antshrike significantly sooner and were more likely to approach the antshrikes after the repositioning behavior than after perching behavior. In addition, Long-winged Antwrens, but not White-flanked, flew toward an antshrike sooner after a longer series of repositioning calls than after a shorter series. We did not distinguish between the Long-winged Antwrens' response as a function of movement vs. vocalizations of the antshrikes, although we argue that vocalizations are likely a more important communication component of repositioning behavior than movement. It remains unclear whether the antshrikes are deliberately signaling the Long-winged Antwrens or the antwrens are taking advantage of the repositioning behavior; active signaling is possible since antshrikes benefit from antwrens. White-flanked Antwrens may be less responsive to the antshrikes since they have a lower propensity to occur in a mixed-species flock. The results indicate that the repositioning behavior of Dusky-throated Antshrikes is a key mechanism of interspecific cohesion of Amazonian mixed-species flocks of the understory.

We describe new fossils from the late Eocene of Mongolia, which show that the crane-like Eogruidae and Ergilornithidae are stem group representatives of the Struthioniformes (ostriches). Currently, both taxa are unanimously assigned to the neognathous Gruiformes (cranes and allies). However, ergilornithids show a progressive reduction of the second toe, and a few earlier authors likened these birds to ostriches, which are the only extant birds with just 2 toes. So far, eogruids and ergilornithids were mainly known from hindlimb bones from the Cenozoic of Asia, and here we provide important new data on the skeletal anatomy of these birds. A partial skull exhibits characteristic features of palaeognathous birds, and ostriches in particular. In its distinctive shape, it furthermore closely resembles the skull of the Eocene palaeognathous Palaeotididae, which are here also considered to be stem group representatives of the Struthioniformes. A femur from the late Eocene of Mongolia likewise corresponds to that of ostriches in derived traits, whereas cervical vertebrae exhibit features of neognathous birds. The fossils suggest that true ostriches (crown group Struthionidae) originated in Asia, and the Neognathae-like morphology of some bones opens a new perspective on the evolution of skeletal characteristics of palaeognathous birds.

We studied the ground colors and maculations of 161 Common Murre (Uria aalge) eggs laid by 43 females in 3 small breeding groups on the cliffs of Skomer Island, Wales, in 2016–2018. Both the colors and maculations varied much more among than within females, providing quantitative evidence for the egg traits that might facilitate the parents' ability to identify their own eggs on the crowded breeding ledges where the density is typically ∼20 eggs m^–2. Ground colors had a trimodal distribution of hue values (whitish to pale brown, pale blue, or vivid blue-green) and maculations ranged from none to complex squiggles and blotches. The eggs laid by each female in different years were similar to one another, and replacement eggs laid by females within years were also more similar to their first egg than to other eggs in the same breeding group. Egg appearance did not differ among the 3 breeding groups that we studied. Our findings thus support anecdotal observations that, within and between years, female Common Murres lay eggs that have similar ground colors and maculations. We do not, however, find evidence that there is much difference among the eggs laid in different parts of a colony.

Migrating birds contend with dynamic wind conditions that ultimately influence most aspects of their migration, from broad-scale movements to individual decisions about where to rest and refuel. We used weather surveillance radar data to measure spring stopover distributions of northward migrating birds along the northern Gulf of Mexico coast and found a strong influence of winds over nonadjacent water bodies, the Caribbean Sea and Atlantic Ocean, along with the contiguous Gulf of Mexico. Specifically, we quantified the relative influence of meridional (north–south) and zonal (west–east) wind components over the 3 water bodies on weekly spring stopover densities along western, central, and eastern regions of the northern Gulf of Mexico coast. Winds over the Caribbean Sea and Atlantic Ocean were just as, or more, influential than winds over the Gulf of Mexico, with the highest stopover densities in the central and eastern regions of the coast following the fastest winds from the east over the Caribbean Sea. In contrast, stopover density along the western region of the coast was most influenced by winds over the Gulf of Mexico, with the highest densities following winds from the south. Our results elucidate the important role of wind conditions over multiple water bodies on region-wide stopover distributions and complement tracking data showing Nearctic–Neotropical birds flying nonstop from South America to the northern Gulf of Mexico coast. Smaller-bodied birds may be particularly sensitive to prevailing wind conditions during nonstop flights over water, with probable orientation and energetic consequences that shape subsequent terrestrial stopover distributions. In the future, the changing climate is likely to alter wind conditions associated with migration, so birds that employ nonstop over-water flight strategies may face growing challenges.

Toll-like receptors (TLRs) are a crucial component of vertebrate innate immune response. Despite their importance, associations of TLR diversity with fitness-related traits have rarely been examined in wild animal populations. Here, we tested for associations of TLR polymorphism with physiological condition in a colonial waterbird, the Black-headed Gull (Chroicocephalus ridibundus). Physiological condition and polymorphism at 4 TLR loci were assessed in 60 gulls from a breeding colony in northern Poland. We found that blood hemoglobin and plasma albumin concentrations were positively associated with TLR diversity across all genotyped loci. Plasma concentrations of albumin and triglycerides were also associated with the presence of specific TLR variants and locus-specific diversity. All significant associations between physiological condition and TLRs were primarily apparent at the level of nucleotide, rather than amino acid allelic variants. Although the exact molecular mechanisms responsible for these associations require further investigation, our study provides strong correlational support for links between TLR diversity and physiological condition in a wild avian population, and it adds to the growing, but still modest, body of evidence for the fitness-related consequences of individual TLR repertoire in wild birds.

Nonstop endurance flights are a defining characteristic of many long-distance migratory birds, but subsequent recovery phases are not typically distinguished from fueling phases (collectively “stopovers”), despite endurance flights inducing marked physiological changes including flight muscle atrophy and gastrointestinal tract reductions. Here, we hypothesize that recovery requires unique behavioral adaptations, leading to departures from the predictions of optimal migration theory for time-minimizing migrants. We predict that recovering birds will (1) select (moist) food-rich habitats on arrival; (2) have slow initial fueling rates due to decreased gastrointestinal capacity; (3) show a negative correlation between stopover duration and arrival condition instead of a negative correlation with fuel deposition rate (FDR); (4) stopover longer than required to store energy reserves for subsequent flights; and (5) show evidence of rebuilding flight muscles. To test these predictions, we studied Blackpoll Warblers (Setophaga striata) in northern Colombia following trans-oceanic flights >2,250 km. Birds selected dry seasonal habitats, despite the proximity of moist forests, and among 1,227 captured individuals, 14–21% were emaciated and 88% had atrophied flight muscles. We recaptured 74 individuals, revealing net positive mass gains and, contrary to prediction (2), no evidence for slow initial recovery rates. Contrary to prediction (3), stopover duration was only weakly correlated with arrival condition and birds with high FDR (4.9% lean body mass day^–1) had shorter durations (3 days) relative to birds with slower rates (7 days): both groups accumulated sufficient fuel to reach nonbreeding (over-wintering) grounds 500–1,000 km away. Mass increases were largely attributable to fat deposition but some birds improved flight muscle condition (31.9%), consistent with prediction (5). Together these results reveal a strong selection for time-minimization in the decisions made by Blackpoll Warblers following trans-oceanic flights, likely mediated through advantages to early arrival on nonbreeding grounds, contrary to our hypothesis of recovery imposing unique selection pressures.

We developed an approach to distinguish among 3 alternative strategies that birds may employ relating the timing of egg laying across elevations to annual variation in spring temperature (phenological reaction norms), which we applied to analyze the breeding phenology of 2 species over an elevational gradient in the Sierra Nevada, California. In a “simple-offset” strategy, birds at different elevations initiate breeding relative to environmental temperature in a consistent manner, in that breeding onset is triggered by a critical temperature regardless of when it occurs in the spring. Elevation-specific reaction norms based on multiple years are offset (high-elevation birds start breeding later) but parallel. In a “delay” strategy, in cooler springs, populations at higher elevations that are sensitive to early-season weather-related risks delay laying onset relative to those at lower elevations, yielding a high-elevation reaction norm that diverges from a low-elevation one at cooler temperatures. Conversely, high-elevation populations in cooler springs that are sensitive to the risk of having insufficient time to complete a breeding cycle advance laying onset relative to lower populations (“advance” strategy), yielding a high-elevation reaction norm than converges with a low-elevation one. Both delay and advance strategies imply an elevation-dependent interaction between temperature and date (photoperiod) in influencing laying onset. Examined across 3 elevation groupings, phenological reaction norms of Mountain Chickadees (Poecile gambeli) were essentially parallel, consistent with simple offset, whereas Dusky Flycatchers (Empidonax oberholseri) relationships were more complex. In cooler springs, mid-elevation flycatchers bred comparatively late relative to lowest-elevation birds (delay), implying greater sensitivity to early-season risks, but still with sufficient time to complete a breeding cycle. However, high-elevation flycatchers bred comparatively early relative to mid-elevation populations (advance); delaying at these highest elevations may not be an option. Our approach revealed differences in risk sensitivity that were consistent with other ecological differences between the 2 species.

We describe a colorful and distinctive new species of tanager from the lower slopes of the Andes of southeastern Peru and western Bolivia. The species was first noted from southeastern Peru in 2000, but little of its natural history was uncovered until the 2011 discovery of a breeding population in deciduous forest in an intermontane valley, the Machariapo valley, in Bolivia. This species appears to be an intratropical migrant, breeding in deciduous forest during the rainy season (November–March) and spending the dry season dispersed along the lower slopes of the Andes, apparently favoring Guadua bamboo-dominated habitats in both seasons. Phylogenetic evidence suggests this tanager is embedded within a clade of thraupids that includes Ramphocelus, Coryphospingus, Loriotus, Tachyphonus, and related genera in the subfamily Tachyphoninae. Within this subfamily, the new species falls in a clade with two monotypic genera, Eucometis penicillata (Gray-headed Tanager) and Trichothraupis melanops (Black-goggled Tanager). There is strong support for a sister relationship between the new tanager and T. melanops, but because all three species in this clade are highly distinctive phenotypically, we propose erecting a new genus and species name for the new tanager.