Whitebark pine (Pinus albicaulis) is a foundation and keystone species of upper subalpine and treeline ecosystems throughout the western United States and Canada. During the past several decades, Cronartium ribicola, an introduced fungal pathogen that causes white pine blister rust in five-needled pines, has caused significant declines in whitebark pine throughout its range. Our research objectives were to examine geographic variation in blister rust infection (total canker density) in whitebark pine found at six alpine treelines east of the Continental Divide in Glacier National Park, Montana, and to determine which environmental factors have the greatest influence on blister rust infection at treeline. Within a total of 30 sampling quadrats (five at each treeline study site), we measured the number of cankers on each whitebark pine in order to assess how blister rust infection varied throughout our study area. We created high-resolution digital elevation models to characterize surface microtopography, and used a geographic information system (GIS) to derive environmental variables of interest. A mixed effects, Poisson regression model determined environmental correlates of blister rust from the resulting set of field and GIS-derived variables. We found that rates of infection varied considerably among treelines, and that treeline sites exhibiting high flow accumulation rates, greater distances to wetlands, slopes facing southwest, higher curvature, greater wind speeds, and close proximity to Ribes and perennial streams had the highest rates of blister rust infection.