Open Access
How to translate text using browser tools
1 May 2013 Nestedness and Patch Size of Bamboo-Specialist Bird Communities in Southeastern Peru
Daniel J. Lebbin
Author Affiliations +

In 2003 and 2004 I investigated the relationship between patch area and number of avian bamboo specialists among 13 patches of Guadua bamboo habitat in southeastern Peru. In these patches, specialists were sensitive to area at local spatial scales. The structure of communities of bamboo specialists was nested, meaning species present in depauperate patches were almost always present in richer patches. Richness of specialist species was positively correlated with the size of the patch. My results indicate that prior estimates of populations of bamboo specialists based on remotely sensed images of vegetation may be underestimates because several specialists were present in small patches difficult to detect in remotely sensed images.


Global richness of bird species reaches its peak in the western Amazon basin (Stotz et al. 1996, Rahbek and Graves 2001). Such a diversity of birds coexists here in part because of resource partitioning among different habitats (Remsen and Parker 1983, Robinson and Terborgh 1995, 1997). In the Amazon of south-eastern Peru, mature forests characterized by a high diversity of trees and a canopy 35–50 m tall with a layer of emergents dominate the lowlands (Salo et al. 1986, Terborgh and Petren 1991). Patches dominated by single plant species occur within this matrix of diverse forest, presenting distinct habitats on which birds specialize. Patches of Guadua bamboo are one example and support a community of specialized insectivorous birds richer than those of other nearby habitats dominated by single species, such as Mauritia palm swamps, Gynerium canebrakes, and groves of Tessaria (Kratter 1997, Lebbin 2007).

Guadua bamboo patches typically grow within forest gaps 30–200 m in diameter (0.07–12.6 ha; Saatchi et al. 2000), but they can also cover larger areas. The southwestern Amazon in Brazil, Peru, and Bolivia contains 12–18 million ha dominated by Guadua bamboo, more than any other portion of the Amazon basin (Nelson 1994, Nelson and Irmño 1998, Saatchi et al. 2000, Silman et al. 2003). Habitats that cover greater areas tend to support greater numbers of species because of species—area relationships (Arrhenius 1921, MacArthur and Wilson 1967, Gotelli 1995). In this study, I investigated whether the number of avian specialists in a Guadua bamboo patch decreases with decreasing patch size and, if so, whether the individual specialists drop out of the community in a predictable fashion. I also discuss the importance of these findings for estimating the sizes of populations of bamboo specialists.



I visited patches of Guadua bamboo at forested research sites along the Manu (Terborgh et al. 1984, Gentry 1990, Robinson and Terborgh 1997), Amigos (Pitman 2006), and Tahuamanu (Alverson et al. 2000) rivers of southeastern Peru (Fig. 1). Bamboo patches consisted of G. sarcocarpa and/or G. weberbaueri, which I did not usually distinguish. My study took place at the Centra de Investigación y Capacitación Río Los Amigos (CICRA), managed by the Asociación para la Conservación de la Cuenca Amazónica (ACCA) and located between the Río Madre de Dios and Río Amigos, at the CM1 ranger station at the mouth of the Río Amigos, and at a bush camp on the Río Amiguillos. I worked at Los Amigos 27–30 July 2002, 11 June—3 August 2003, 16 February—21 April 2004, 1–23 June 2004, 20 July—15 September 2004, and 1 October—10 November 2004. More information concerning the research stations, climate, habitats, and natural history of Los Amigos can be found at the ACCA's website ( and in Pitman (2006).


Map of study areas in lowland southeastern Peru. Areas above 500 m elevation are shaded gray, and research sites are referenced as closed circles. Numbered sites are Oceania (1; 11° 23′ S, 69° 32′ W), Cocha Cashu Biological Station (2; 11° 85′ S, 71° 32′ W), Playa Bonita (3; 11° 50′ 19′ S, 71° 23′ 07′ W), La Vieja bush camp along the Río Amiguillos (4; 12° 26′ S, 70° 16′ W), CICRA (5; 12° 34′ S, 70° 05′ W), and CM1 (6; 12° 34′ S, 70° 04′ W), which ranged in elevation from 270 to 350 m above sea level.


Inside Manu National Park along the Río Manu, I worked from 26 June to 19 July 2004 at Estación Biológica Cocha Cashu and at Playa Bonita, located approximately 6 km north of Cocha Cashu. Habitats included mature floodplain forests and Guadua bamboo patches, described in more detail by Terborgh et al. (1990), Silman et al. (2003), and Patterson et al. (2006).

Between 8 and 18 October 2004, I visited a large patch of G. weberbaueri bordered by mature terra firme forest and cleared pasture along the north bank of the Río Tahuamanu at Oceania, Departamento Madre de Dios, Peru, 6 km west of Iberia, roughly 130 km north of Puerto Maldonado on the road to Iñapari, a frontier town on the border with Acre, Brazil. This site is further described by Tobias et al. (2007).


I surveyed the bird communities of 13 bamboo patches or patch clusters ranging in size from less than 0.5 ha to 48.3 ha (mean = 11.1 ha, SD = 13.7) at Los Amigos, Manu National Park, and along the Río Tahuamanu (Fig. 1). I did point counts and spot-mapping along transects and supplemented these observations with mist-net captures. Patch clusters consisted of multiple imperfectly distinct bamboo patches close enough (<100 m) together that I suspected specialists would treat them as a single patch, and therefore I analyzed them as a single patch. Sampling within the 13 patches totaled 140.4 hr over 77 days. Alone, I sampled along transects marked every 25 m, between dawn and no later than 10:00 (and usually ending before 09:00). I recorded all birds seen or heard while walking and while stationary during 8-min point counts spaced no farther than ∼150 m apart along transects. In 11 of these same bamboo patches, I also captured 134 species of birds in mist nets (1096 captures in 36 953.5 net-m hr over 53 days). I also estimated the areas of these 13 bamboo patches by using a geographic information system in ArcMap 9.1 (ESRI 2005). Patch area, and net capture, and census effort for each patch are summarized in Table 1. I believe this search effort was more than sufficient to detect almost all bamboo specialists in these patches, as I also spent much additional time recording other kinds of data or camped in these patches without detecting species undetected during censuses or mist netting.

From these surveys, I created a presence—absence matrix to summarize use of each patch by bamboo specialists (Table 2). On the basis of a literature review and surveys of other adjacent habitats, I categorized Guadua bamboo specialists according to their degree of habitat specialization, with “obligate” specialists restricted to bamboo throughout their ranges, “near-obligate” specialists only occasionally found outside bamboo, and “facultative” or “potentially facultative” specialists having at least a local habitat preference for bamboo (Kratter 1997, Lebbin 2007).


Nestedness is a measure of order within a set of communities (Atmar and Patterson 1993). In a perfectly nested system, no species found within a depauperate community (island or habitat patch) is absent from a more species-rich community. I used Atmar and Patterson's (1995) Nestedness Calculator to determine the degree of nestedness of these bamboo-specialist communities. The Nestedness Calculator generates a measure, referred to as the “temperature” (T), from a presence—absence matrix and compares the observed temperature to those of 5000 matrices created by randomly rearranging the original matrix. The temperature can range from zero to 100° with zero being perfectly nested and low temperatures representing ordered systems with little “heat of disorder” and high temperatures reflecting highly disordered, un-nested systems (Atmar and Patterson 1993). I used one-tailed Spearman ρ correlation tests to investigate correlations between area of the bamboo patch, nestedness rank, and species richness of bamboo specialists.


Location, name, area, and mist-net and survey effort (rounded to nearest hour) expended to sample the bird communities of 13 patches of Guadua bamboo, southeastern Peru. The numbers of bamboo specialists detected in each patch are apportioned by the number of total specialists and of obligate and near-obligate specialists (facultative specialists excluded). The final column presents the nestedness rank of each patch when only obligate and near-obligate specialists are analyzed. Patches with the bird communities most nested within the matrix have the highest nestedness rankings. Patches 2 and 4 were likely larger prior to this study, but recent clearing for agriculture had reduced the extent of patch 2, and within 2 years bamboo died off naturally in large areas adjacent to patch 4. Patch 11 bordered an airstrip and may have been larger many years prior to this study. Less search effort was required and expended in smaller patchers. In patch 12, the total sampling time includes a single ∼1-hr survey in the late afternoon (all other patches were censused during the morning only).



Within the 13 Guadua bamboo patches, I detected 38 bird species of some degree of specialization, including 20 classified as obligate or near-obligate specialists and 18 classified as facultative or potentially facultative specialists. Communities of bamboo specialists were significantly nested, whether the analysis was restricted to obligate and near-obligate specialists (T = 12.26°, P = 2.19 × 10-19) or included all specialists (T = 10.08°, P = 4.98 × 10-29). Nestedness rank of bamboo patches (Table 1) was negatively correlated with patch size (rs = -0.82, P < 0.001, n = 13, facultative specialists excluded; rs = -0.85, P < 0.001, n = 13, all specialists included), meaning that smaller patches were used primarily by a subset of the species found in larger patches. Richness of specialist species was positively correlated with size of bamboo patches (rs= 0.85, P < 0.001, n = 13, facultative specialists excluded; rs = 0.85, P < 0.001, n = 13, all specialists included).


Presence—absence matrix of bamboo specialists (0 = absent, 1 = present) in 13 patches of Guadua bamboo surveyed in southeastern Peru. Values of 1 are shaded in gray to make the nestedness easier to recognize. The subset of obligate and near-obligate specialists is highlighted in boldface and considered separately as an additional presence-absence matrix. Species not in bold are facultative bamboo specialists or potentially facultative bamboo specialists. Bamboo patch numbers correspond with those in Table 1.




Communities of bamboo specialists were nested and highly sensitive to patch area at the local scale. As patch size declined, specialist species dropped out of the community in a nonrandom, nested fashion. Small bamboo patches may still support a diversity of specialists, and I found 10 species of near-obligate and obligate bamboo specialists in a 0.86-ha patch (number 8) near CICRA. These included the Peruvian Recurvebill (Simoxenops ucayalae), not detected in the slightly larger patches 9 and 12.

No obligate specialists and only a single facultative specialist, the Chestnut-tailed Antbird (Myrmeciza hemimelaena), were present in the smallest bamboo patch (patch 13, 0.15 ha), suggesting that 0.15 ha is below the minimum patch size most specialists require. The Peruvian Warbling-Antbird (Hypocnemis peruviana peruviana), also detected in this tiny bamboo patch, is closely related to the bamboo specialist Yellow-bellied Warbling-Antbird (Hypocnemis subflava collinsi). The Peruvian Warbling-Antbird was likely using dense forest along a stream nearby as well as the bamboo patch, potentially offering a glimpse of the transition that presumably occurs when forest species colonize bamboo patches in the early stages of the process of specialization for bamboo habitat.


I found bamboo specialists in small patches, indicating that they may occur at higher densities and have larger populations than previously estimated. My results indicate that occurrence of specialists may differ from that assumed in prior studies. Of 19 specialists (Table 3) compared, I detected 14 (74%) in patches smaller than territory sizes estimated by Kratter (1997) and Lloyd (2004). This likely indicates that these species' territories can be smaller than previously estimated on the basis of a small sample of bamboo patches; however the influence of a history of shrinking patch size or species incorporating adjacent forest into their territory can not be completely ruled out. Four of the 14 species (29%) were facultative specialists, possibly defending territories larger than the smallest bamboo patch within which they were detected. The remaining ten species were obligate and near-obligate specialists, less likely to use adjacent forest habitats. I detected all nine of these obligate and near-obligate specialists in at least two patches smaller than their previously estimated territory sizes. I found the Striated Antbird (Drymophila devillei) in three smaller patches, the Rufous-headed Woodpecker (Celeus spectabilis) and Peruvian Recurvebill in four smaller patches, the Flammulated Pygmy-Tyrant (Hemitriccus flammulatus) in five smaller patches, and the Brown-rumped Foliage-Gleaner (Automolus melanopezus) and Dusky-tailed Flatbill (Ramphotrigon fuscicauda) in six smaller patches. Although it is possible that these species incorporated both forest and bamboo into their territories or that these bamboo patches were larger prior to this study, it seems just as or more likely that they can use territories smaller than previous thought. Small bamboo patches are often undetected in remotely sensed images. Individual birds inhabiting small bamboo patches or a combination of small bamboo patches and bits of adjacent forest will not be counted in population estimates, and actual sizes of populations of these specialists may be underestimated.


Density and size of territories of Guadua bamboo specialists from Kratter (1997) and Lloyd (2004) and the size of the smallest patch in which specialists were detected in this study. Territory size was estimated by dividing 100 ha by the number of territories or density of birds per 100 ha, under the assumption the entire area was saturated or included in a territory.


Other factors may influence the presence of bamboo specialists within a patch, such as proximity to rivers that may serve as dispersal routes for certain species. I encountered the Manu Antbird (Cercomacra manu) in only three of the 13 patches I surveyed, all of which were within a few hundred meters of rivers. The Manu Antbird is also closely related to the Jet Antbird (C. nigricans), Rio Branco Antbird (C. carbonaria), Mato Grosso Antbird (C. melanaria), and Bananal Antbird (C. ferdinandi), of which the latter three are also closely associated with riparian habitats (Zimmer and Isler 2003). If the Manu Antbird requires proximity to rivers for dispersal or other reasons, then it may be absent from vast areas of bamboo far from large streams in terra firme, resulting in an overestimate of its population based on the extent of bamboo.

Specialists may also be absent from suitable habitat because of interspecific competition. In no patch I sampled did I find more than two of the three specialist tody-tyrants or more than one of the three Synallaxis spinetails. Interspecific competition among these ecologically similar tody-tyrants may prevent all three tody-tyrants, the Long-crested Pygmy-Tyrant (Lophotriccus, Flammulated Pygmy-Tyrant, and White-cheeked Tody-Flycatcher (Poecilotriccus albifacies), or even two of three spinetails, the Ruddy Spinetail (S. rutilons), Chestnut-throated Spinetail (S. cherriei), and Cabanis's Spinetail (S. cabanisi) from co-occurring in a single patch. Therefore, the White-cheeked Tody-Flycatcher may be absent from much suitable habitat (e.g., terra firme bamboo patches) because of the presence of the Flammulated Pygmy-Tyrant and Long-crested Pygmy-Tyrant. Additional sampling of the specialist bird community of bamboo patches deep within terra firme would help clarify these patterns of these species' co-occurrence and would clarify whether the Manu Antbird is as scarce away from rivers as my study suggests.

My data come from areas of relatively intact and unfragmented forests so may not be applicable to isolated bamboo patches in landscapes heavily altered by people. Regional development proposals, such as the paved “Trans-Oceanica” highway, likely will increase human settlement, habitat destruction, and regrowth of bamboo within human-altered landscapes (Nepstad et al. 2001, Conover 2003). Conditions under which specialists are present or absent in bamboo patches regenerating from human disturbances may be a worthy study for future researchers. I have seen many specialists, such as the Chestnut-capped Puffbird (Bucco macrodactylus), Cabanis's Spinetail, Bamboo Antshrike (Cymbilaimus sanctaemariae), and Yellow Tyrannulet (Capsiempis flaveola) during brief visits to patches of bamboo growing in clearings along the Manu Road that are contiguous with areas of natural bamboo and forest, and I have seen the Long-crested Pygmy-Tyrant on territories at the edge of treefall gaps and forest edges created by loggers at Los Amigos and along the road to Iberia. Bamboo that invades roadsides and pastures, however, may not support specialists if the quantity or quality of the surrounding habitats is difficult for specialists to disperse through, and I have not encountered any bamboo specialists during short visits to such isolated bamboo patches along roads near Puerto Maldonado. Therefore, I am doubtful that regrowth of bamboo in isolated, human-disturbed areas will increase the habitat available for bamboo specialists of conservation concern until data suggesting otherwise become available.


The manuscript benefited greatly from the support of many Cornell staff, especially my dissertation committee members J. Fitzpatrick, D. Winkler, and P. Marks. K. Cockle, J. I. Areta, and several anonymous reviewers also provided useful suggestions for revisions. G. Radko helped me edit the map. I am grateful to many assistants and colleagues who helped in the field, especially M. Andersen, N. Castro, M. Cuba, R. Huayllapuma, P. Hosner, E. Mendoza, J. Quispe, J. Tobias, and W. Tori. My research was financially supported by the Cornell Laboratory of Ornithology, Fulbright, Asociación para la Conservación de la Cuenca Amazónica (ACCA), Sigma Xi Grants-in-Aid, an Andrew W. Mellon Student Research Grant, the Mario Einaudi Center for International Studies and Latin American Studies Program. I am grateful to El Instituto Nacional de Recursos Naturales (INRENA) for permission to work in Peru.



W. S. Alverson , D. K. Moskovits , and J. M. Shopland [EDS.]. 2000. Bolivia: Pando, Rio Tahuamanu. Rapid Biological Inventories Report 1. Field Museum, Chicago. Google Scholar


O. Arrhenius 1921. Species and area. Journal of Ecology 9:95–99. Google Scholar


W. Atmar , and B. D. Patterson . 1993. The measure of order and disorder in the distribution of species in fragmented habitats. Oecologia 96:373–382. Google Scholar


W. Atmar , and B. D. Patterson . 1995. The nestedness calculator: a visual basic program, including 294 presence-absence matrices. AICS Research, Inc., University Park, NM. Google Scholar


T. Conover 2003. Peru's long haul: highway to riches or ruin. National Geographic, p. 80–111. Google Scholar


Esri . 2005. ArcMap 9.1. ESRI, Inc., Redlands, CA. Google Scholar


A. H. Gentry [ED.] 1990. Four neotropical rainforests. Yale University Press, New Haven, CT. Google Scholar


N. J. Gotelli 1995. A primer of ecology. Sinauer Associates, Sunderland, MA. Google Scholar


A. W. Kratter 1997. Bamboo specialization by Amazonian birds. Biotropica 29:100–110. Google Scholar


D. J. Lebbin 2007. Habitat specialization among Amazonian birds: why are there so many Guadua bamboo specialists? Ph.D. dissertation, Cornell University, Ithaca, NY. Google Scholar


H. Lloyd 2004. Habitat and population estimates of some threatened lowland forest bird species in Tambopata, south-east Peru. Bird Conservation International 14:261–277. Google Scholar


R. H. MacArthur and E. O. Wilson . 1967. The theory of island biogeography. Princeton University Press, Princeton, NJ. Google Scholar


B. W. Nelson 1994. Natural forest disturbance and change in the Brazilian Amazon. Remote Sensing Reviews 10:105–125. Google Scholar


B. W. Nelson , AND M. N. Irmão . 1998. Fire penetration in standing Amazon forest. Proceedings of the Ninth Brazilian Remote Sensing Symposium, 19–12 September 1998, Santos, Brazil. Google Scholar


D. Nepstad , G. Carvalho , A. Barros , A. Alencar , J. Capobianca , J. Bishop , P. Moutinho , P. Lefebvre , S. U. Lopes , and E. Prins . 2001. Road paving, fire regime feedbacks, and the future of Amazon forests. Forest Ecology and Management 154:395–407. Google Scholar


B. D. Patterson , D. F. Stotz , and S. Solari . 2006. Biological surveys and inventories in Manu. Fieldiana 110:3–12. Google Scholar


N. C. A. Pitman 2006. An overview of the Los Amigos watershed, Madre de Dios, southeastern Peru. June 2006 version of an unpublished report available from its author at npitman@amazonconservation.orgGoogle Scholar


C. Rahbek , and G. R. Graves . 2001. Multiscale assessment of patterns of avian species richness. Proceedings of the National Academy of Sciences USA 98:4534–4539. Google Scholar


J. V. Remsen Jr ., and T. A. Parker III . 1983. Contribution of river-created habitats to bird species richness in Amazonia. Biotropica 15:223–231. Google Scholar


S. K. Robinson , and J. Terborgh . 1995. Interspecific aggression and habitat selection by Amazonian birds. Journal of Animal Ecology 64:1–11. Google Scholar


S. K. Robinson , and J. Terborgh . 1997. Bird community dynamics along primary successional gradients of an Amazonian Whitewater river. Ornithological Monographs 48:641–672. Google Scholar


S. S. Saatchi , B. Nelson , E. Podest , and J. Holt . 2000. Mapping land cover types in the Amazon Basin using 1 km JERS-I mosaic. International Journal of Remote Sensing 21:1201–1234. Google Scholar


J. Salo , R. Kalliola , I. Häkkinen , Y. Mäkinen , P. Niemelä , M. Puhakka , and P. D. Coley . 1986. River dynamics and the diversity of Amazon lowland forest. Nature 322:254–258. Google Scholar


M. R. Silman , E. J. Ancaya , and J. Brinson . 2003. Los bosques de bambú en la Amazonia occidental, p. 63–74. In R. Leite Pitman, N. Pitman, and P. Álvarez [EDS.], Alto Purús: biodiversidad, conservación y manejo. Center for Tropical Conservation, Lima. Google Scholar


D. F. Stotz , J. W. Fitzpatrick , T. A. Parker III , and D. K. Moskovits . 1996. Neotropical birds: ecology and conservation. University of Chicago Press, Chicago. Google Scholar


J. W. Terborgh , J. W. Fitzpatrick , and L. Emmons . 1984. Annotated checklist of bird and mammal species of Cocha Cashu Biological Station, Manu National Park, Peru. Fieldiana 21:1–29. Google Scholar


J. Terborgh , and K. Petren . 1991. Development of habitat structure through succession in an Amazonian floodplain forest, p. 28–46. In S. S. Bell, E. D. McCoy, and H. R. Mushinsky [EDS.], Habitat structure: the physical arrangement of objects in space. Chapman and Hall, London. Google Scholar


J. Terborgh , S. K. Robinson , T. A. Parker III , C. A. Munn , and N. Pierpont . 1990. Structure and organization of an Amazonian forest bird community. Ecological Monographs 60:213-238. Google Scholar


J. A. Tobias , D. J. Lebbin , A. Aleixo , M. J. Andersen , E. Guilherme , P. A. Hosner , and N. Seddon . 2007. Distribution, behavior, and conservation status of the Rufous Twist-wing Cnipodectes superrufus. Wilson Journal of Ornithology 120:38–49. Google Scholar


K. J. Zimmer, and M. L. Isler . 2003. Family Thamnophilidae (typical antbirds), p. 448–681. In J. del Hoyo, A. Elliott, and D. A. Christie [EDS.], Handbook of the Birds of the World, vol. 8: broadbills to tapaculos. Lynx Edicions, Barcelona. Google Scholar
© 2013 by The Cooper Ornithological Society. All rights reserved. Please direct all requests for permission to photocopy or reproduce article content through the University of California Press's Rights and Permissions website,
Daniel J. Lebbin "Nestedness and Patch Size of Bamboo-Specialist Bird Communities in Southeastern Peru," The Condor 115(2), 230-236, (1 May 2013).
Received: 12 December 2011; Accepted: 1 January 2012; Published: 1 May 2013
Back to Top