Chubutemys copelloi is the oldest nonmarine cryptodire from South America represented by a skull. The skull and associated postcranial fragments are from the Aptian Cerro Costaño Member of the Cerro Barcino Formation of Chubut, Argentina. Chubutemys has a processus trochlearis oticum, showing that it is a cryptodire, and an enclosed canalis caroticus internus extending to the posterior margin of the pterygoid, showing that it is a eucryptodire. The skull of Chubutemys is similar to that of other primitive eucryptodires, particularly Dracochelys, but also to Hangaiemys, Judithemys, Sinemys, and Ordosemys. Chubutemys differs from all these, however, in possessing a solidly roofed skull, formed by long, wide parietals, rather than a posterior emargination. Chubutemys also differs from these taxa in having no cheek emargination.

A phylogenetic analysis using PAUP* analyzed 104 parsimony-informative characters resolving into one most parsimonious cladogram of 224 steps, a consistency index of 0.55, and a retention index of 0.74. The phylogenetic analysis weakly joins Chubutemys and meiolaniids on the basis of the prefrontal-postorbital contact. Chubutemys also has a fully roofed skull and slitlike posterior opening of the foramen caroticum laterale (foramen posterius canalis caroticus laterale), features to be expected in a meiolaniid sister taxon. Chubutemys provides further evidence that meiolaniids are related to “basal” eucryptodires (“sinemydids/macrobaenids”), that is, eucryptodires outside the living Cryptodira, the Polycryptodira.

The basicranial morphology of meiolaniids, with an intrapterygoid slit, rather than being a unique feature of the group is instead a modified state of the primitive eucryptodire condition, as seen in such forms as Chubutemys, Dracochelys, Ordosemys, and Sinemys. The intrapterygoid slit of meiolaniids is homologous with the pterygoid flange associated with the foramen caroticum laterale (foramen posterius canalis caroticus laterale of Sukhanov) in non-Polycryptodiran eucryptodires like Ordosemys.

Chubutemys shows that nonmarine eucryptodires were present in South America in the Cretaceous, as they were in North America, central Asia, and Australia.