The koomal (Trichosurus vulpecula hypoleucus) is a declining subspecies (‘near-threatened’), residing largely within the Western Australian jarrah forest, a forest managed for both conservation and for forestry (roughly half is available for logging). Information on the spatial dynamics of koomal is essential to evaluating whether logging prescriptions provide adequate protection for this threatened species. Here we describe the home range and territoriality of koomal, as well as the characteristics and use of their den trees, at multiple sites within the jarrah forest. We also compare the characteristics of den trees used by koomal against logging prescriptions and previous models that estimate availability of den trees. Results suggested that koomal home ranges varied between sites and sexes, with males having the larger home ranges. Koomal also maintained exclusive core territories, probably to protect their den trees from same-sex individuals. Den trees used by koomal had similar characteristics to those outlined in logging prescriptions, but also included two additional characteristics that may improve the retention of trees suitable for koomal: den trees were preferentially of marri (Corymbia calophylla) and wandoo (Eucalyptus wandoo) species, and had some level of canopy connectivity. Overall, findings from this study should help future evaluations of the effectiveness of logging prescriptions in providing adequate den availability for koomal.

Recent research suggests that alluvial aquifers in southern and eastern Australia may contain a diverse subterranean aquatic fauna (i.e. stygofauna). However, to date only a limited number of alluvial aquifers have been studied and little molecular data are available to assess species-level diversity and spatial patterns of genetic variation within stygofaunal species. In this paper, we present the initial results of a stygofaunal survey of the Burdekin River alluvial aquifer in Queensland, extending the northern range of alluvial aquifers along the east coast of Australia that have been investigated. The survey resulted in the collection of bathynellid stygofauna (Syncarida: Bathynellacea) and genetic analyses were conducted to determine species level diversity using the mitochondrial cytochrome oxidase subunit I (COI) gene. We further investigated the phylogenetic relationships of the species with bathynellids from western and southern Australia to assess the generic status of species. Four highly divergent COI lineages within the Parabathynellidae and one lineage within the Bathynellidae were found. These lineages did not group within any described genera, and phylogenetic analyses indicated that both local radiations and the retention of a lineage that was more apical in the genealogy account for the diversity within the Parabathynellidae in the Burdekin River alluvial aquifer. Most COI lineages were sampled from only a single bore, although one taxon within the Parabathynellidae was found to be more widespread in the aquifer. Haplotypes within this taxon were not shared among bores (Φ_ST = 0.603, P < 0.001). Overall, the high species diversity for bathynellaceans from an alluvial aquifer reported here, and surveys of bathynellaceans in several other alluvial systems in south-eastern Australia, suggests that groundwater ecosystems of eastern Australia may contain high stygofaunal diversity by Australian and world standards, particularly at the generic level for parabathynellids.

Tiger snakes (Notechis scutatus) and lowland copperheads (Austrelaps superbus) are both large viviparous elapid snakes confined to the cooler, mesic regions of southern Australia. In spite of both species being common and widespread in the island state of Tasmania, no quantified studies on the trophic ecology of these two snakes from the main island has been published. During a two-year period we collected field data from 127 adult A. superbus and 74 adult N. scutatus from throughout eastern Tasmania. For both species, males were larger than females with respect to all measured parameters, including mass and head size. Reproduction in females was strongly seasonal and clutch size was not related to maternal body size. N. scutatus has a larger head than A. superbus and consequently ingests both small and large prey. N. scutatus in our study displayed the most catholic diet of any Australian elapid studied to date and consumed mammals (possum, bandicoot, antechinus, rats, mice), birds (fairy wrens), fish (eel, trout) and frogs. A. superbus shows a more specialist diet of large volumes of predominately ectothermic prey (frogs, lizards, snakes) even at maximal sizes and was more likely to contain ingested prey than specimens of N. scutatus. Distinctive rodent bite scars were common on N. scutatus but rare on A. superbus. The high frequency of rodent bite scars on N. scutatus further supports our findings of a primarily endothermic diet for mature specimens. We suggest that significant differences in head size, and hence diet, as well as a taxonomically diverse suite of potential prey in Tasmania allow both these large snakes to coexist in sympatry and avoid interspecific competitive exclusion.

The formation of Australia’s stony deserts 2–4 million years ago will have reduced the availability of suitable habitat for lizards extant at that time, particularly for fossorial species. For such taxa, mats of litter, which form underneath woody vegetation, may offer the only suitable refuge sites in a greater matrix of unsuitable stony and compacted clay habitat. The integrity of litter mats in Australia’s stony deserts is potentially threatened by trampling by large introduced herbivores and by surface flows during flood events. Here we assess the importance of litter mats as habitat for lizards in these stony deserts and determine the suitability of the mats in relation to disturbance regimes. We surveyed 85 sites in the stony desert in the extreme south of the Northern Territory, using hand-raking as the sampling technique. We located 85 individuals of eight lizard species from three families, including 18 individuals of the nationally vulnerable monotypic pygopodid Ophidiocephalus taeniatus, establishing the significance of this limited microhabitat. Lizards were located underneath mats produced from the litterfall of four species of Acacia shrubs, though were not evenly distributed across these four mat types. Our results also provide the first evidence of the impact of large introduced herbivores on the suitability of litter mats. Although this was not statistically significant, lizards were more likely to be located at sites without disturbance from large herbivores, and were located only under individual mats that exhibited no sign of disturbance.

Several studies report methods for determining the age of juvenile Queensland koalas (Phascolarctos cinereus adustus) but these are mostly based on data from captive populations, because observing the birth of koalas in their natural habitat is extremely rare. We identified the exact date of birth for two male joeys by initially observing one within minutes and the other within hours of their birth, at St Bees Island, central Queensland. Successive measurements of head length, as these individuals matured, were used to construct a growth curve for free-ranging juveniles. When tested, only one previously published growth curve (based on body mass) was able to accurately estimate the age of the two joeys. Both methods were then tested for precision using morphometric data for other juvenile koalas in the St Bees population. The estimation of age of juvenile koalas was considerably more precise when based on head length. These results demonstrate the inaccuracy that may be inherent in growth curves derived from captive animals and also show that estimates of age based on data from individuals in a particular population or locality may not be accurate throughout the range of a species.

Located between New Guinea and Australia, Torres Strait and its islands provide an opportunity to examine the results of recent isolation on the Australo-Papuan fauna. However, records of the modern diversity of terrestrial vertebrates on the islands remained scattered and poorly documented. Analyses of terrestrial vertebrate inventories and physical island variables can provide insight into pre-existing conditions of the Sahul land bridge and useful strategies for conservation efforts. We collated all available records of terrestrial vertebrates from the 17 inhabited islands and supplemented these with our own systematic surveys. We used Spearman’s rank correlation coefficient and nested analysis to determine how species richness relates to physical island variables. We also used cluster analysis to group similar islands based on their vertebrate assemblages. Vertebrate richness is not correlated with Simpson’s habitat diversity but is correlated with total number of habitat types, indicating that rare habitats may contribute disproportionately to richness. The archipelago supports a depauperate Australo-Papuan fauna and the assemblages found on smaller islands are subsets of those on larger islands. Island size is the most effective predictor of species richness, and the analysis reveals that geographically related islands support similar suites of species. The frequency with which our surveys added new records to individual island inventories highlights the need for additional sampling in the region.

Land alteration for intensive agriculture has been a major cause of species decline and extinction globally. In marginal grazing regions of southern Australia, native perennial shrubs are increasingly being planted to supplement pasture feeding of stock. Such revegetation has the benefits of reducing erosion and salinity, and importantly, the potential provision of habitat for native fauna. We explored the use of revegetated native saltbush by the sleepy lizard (Tiliqua rugosa) an endemic Australian species common in the region. We repeatedly sampled revegetated saltbush throughout 2010 and 2011 for adults (n = 55) and juveniles (n = 26). Using genotypes from eight microsatellite loci, parents were assigned to half of all juveniles with high statistical confidence. Parents were sampled in the same patch of revegetated saltbush as their offspring, thus supporting the observation that juvenile sleepy lizards remain within the home range of their parents before dispersal. Most importantly, our findings indicate that revegetated saltbush provides important habitat for T. rugosa at significant life stages – before and during breeding for adults, and before dispersal for juveniles. We conclude that revegetation using simple, monoculture plantations provides beneficial habitat for T. rugosa and may also be beneficial habitat for other native species in human-altered agricultural landscapes.

Knowledge of population structure and patterns of connectivity is required to implement effective conservation measures for the purple-crowned fairy-wren (Malurus coronatus), a threatened endemic of northern Australia. This study aimed to identify barriers to dispersal across the distribution of M. coronatus, investigate the impact that the recent declines may have on population connectivity, and propose conservation actions to maintain natural patterns of gene flow. Analysis of mitochondrial DNA sequences from 87 M. coronatus identified two phylogenetic clusters that corresponded with the phenotypically defined western (M. c. coronatus) and eastern (M. c. macgillivrayi) subspecies. The genetic divergence between these subspecies was consistent with isolation by a natural barrier to gene flow, and supports their separate conservation management. Within the declining M. c. coronatus, the lack of genetic divergence and only slight morphological difference between remnant populations indicates that populations were recently linked by gene flow. It is likely that widespread habitat degradation and the recent extirpation of M. c. coronatus from the Ord River will disrupt connectivity between, and dynamics within, remnant populations. To prevent further declines, conservation of M. coronatus must preserve areas of quality habitat and restore connectivity between isolated populations.

Dispersal ability is a fundamental attribute of threatened species that influences their prognosis for survival in fragmented habitats. More vagile species are considered to be under lower threat from habitat fragmentation than more sedentary species. This study investigates morphological variation amongst island and mainland populations of a threatened Australian passerine, the white-fronted chat (Epthianura albifrons), to review previous conclusions about levels of population differentiation and consequent conclusions about dispersal ability. Standard body measurements were taken from wild-caught birds from three islands and three mainland regions of Australia, ranging over a latitudinal distance of 1150 km and a longitudinal distance of 3300 km. Significant size variation in wing, bill and headbill lengths were found amongst populations, revealing a significant latitudinal trend consistent with ‘Bergmann’s Rule’. Even after accounting for the latitudinal trend, island populations showed significant differentiation from mainland populations in some attributes, although island populations were not consistently larger than mainland populations, as predicted by the ‘Island Rule’. A lack of size variation between island and mainland museum specimens has historically been used to conclude that white-fronted chats are capable of crossing an oceanic barrier of at least 30 km. The level of population differentiation identified in this study suggests that previous estimates of dispersal capacity may be overestimated.