Xenarthrans possess a suite of characteristics that make them among the most unusual of mammals. Understanding the functional significance of these traits is one prominent reason why xenarthrans matter. In addition, Xenarthra is currently considered one of the basal clades of placental mammals, and the only one to originate in South America. Consequently, studies of xenarthrans can provide important insights into the evolution of early placentals. The fossil record contains hundreds of recognized species of xenarthrans but this rich evolutionary history is currently distilled into just 31 extant species. Preserving this heritage through various conservation initiatives is yet another reason why xenarthrans matter. This Special Feature on xenarthrans provides an overview of current work and identifies many areas requiring further study. It is our hope that this Special Feature will raise the profile of xenarthrans among mammalogists and perhaps entice some to consider addressing one or more of the many lingering questions that remain about this enigmatic group.

Recent studies show Xenarthra to be even more isolated systematically from other placental mammals than traditionally thought. The group not only represents 1 of 4 primary placental clades, but proposed links to other fossorial mammal taxa (e.g., Pholidota, Palaeanodonta) have been contradicted. No unambiguous Paleocene fossil xenarthran remains are known, and Eocene remains consist almost exclusively of isolated cingulate osteoderms and isolated postcrania of uncertain systematic provenance. Cingulate skulls are unknown until the late middle Eocene, and the oldest sloth and anteater skulls are early Oligocene and early Miocene age, respectively; there are no nearly complete xenarthran skeletons until the early Miocene. Ecological reconstructions of early xenarthrans based on extant species and the paleobiology of extinct Neogene taxa suggest the group's progenitors were myrmecophagous with digging and perhaps some climbing adaptations. The earliest cingulates were terrestrial diggers and likely myrmecophagous but soon diverged into numerous omnivorous lineages. Early sloths were herbivores with a preference for forested habitats, exhibiting both digging and climbing adaptations. We attribute the rarity of early xenarthran remains to low population densities associated with myrmecophagy, lack of durable, enamel-covered teeth, and general scarcity of fossil localities from tropical latitudes of South America. The derivation of numerous omnivorous and herbivorous lineages from a myrmecophagous ancestor is a curious and unique feature of xenarthran history and may be due to the peculiar ecology of the native South American mammal fauna. Further progress in understanding early xenarthran evolution may depend on locating new Paleogene fossil sites in northern South America.

A detailed analysis of 1,039 scientific studies of extant armadillos (Xenarthra: Cingulata, Dasypodidae) published in the last 25 years (1989–2013) revealed substantial biases in coverage, including taxonomically, the locales where field studies were conducted, and in the topics investigated. Examination of the number of other publications that cited each paper revealed that 470 (45%) papers had been cited no more than 10 times, 249 (24%) had never been cited, and 112 (11%) were not even found in the Google Scholar database. The most heavily cited papers were molecular phylogenetic analyses that often used tissues from one or more species of armadillo but were not about the animals per se. Thus, it appears that research on armadillos is plagued by numerous gaps in coverage and is not reaching a wide audience. These data indicate obvious opportunities for future research. In addition, recent findings suggest that even relatively well-studied phenomena may require reexamination. Here, we review recent advances in the study of armadillos and highlight promising areas for future work. One critical need is for a thorough systematic revision of Dasypodidae to be completed. This will make it possible to prioritize those species and populations most in need of study. Additionally, more long-term field studies of populations of marked individuals are required. Although there are many important and interesting questions waiting to be answered, the small number of researchers currently conducting studies of armadillos, particularly in the wild, means that progress will be slow.

Xenarthran teeth are rootless and continuously growing. They lack an outer enamel layer and consist instead of a combination of 2 generally different varieties of dentine with or without an outer collar of cementum. This dental make-up is unique among mammals. In the last decade, xenarthran teeth have been subject to a number of studies regarding microscopic features, including analyses of microstructure and microwear patterns. Here, we present a review of the present knowledge in these 2 fields together with new results on feeding adaptations in the giant ground sloth, Megatherium americanum. Microwear patterns suggest that M. americanum fed mainly on plants with low to moderate intrinsic toughness, although we observe a trend that microwear patterns in extinct sloths may reflect habitat (i.e., feeding in open habitats with higher amounts of grit versus closed habitats with lower amounts of grit) as much as, if not more than, the texture of ingested food.

We present a survey of the morphological diversity of the bony labyrinth of the inner ear in Xenarthra, including the fossil ground sloth Megatherium. Using a combination of traditional and geometric morphometrics, correlation analyses, and qualitative observations, we attempt to extract independent and informative phylogenetic characters of the bony labyrinth for the superorder. Geometric morphometric analyses demonstrate a strong imprint of phylogenetic history on the shape of the bony labyrinth of xenarthrans and a weak influence of allometry. Discrete characters mapped on a consensus cladogram for xenarthrans show support for many traditional nodes within the superorder and may also provide critical information for problematic nodes within Cingulata. A relatively large lateral semicircular canal may, for instance, represent a synapomorphy for the molecular clade allying fairy armadillos (Chlamyphorinae) to the Tolypeutinae. Striking convergences were detected when comparing Megatherium, the giant ground sloth, with extant armadillos and Chlamyphorus, the pink fairy armadillo, with the extant three- and two-toed sloths. These findings have the potential to help understand the phylogenetic relationships of fossil xenarthrans.

Hairy armadillos constitute an ecologically homogeneous and morphologically similar group with currently 5 species classified in the subfamily Euphractinae. Among them, the Andean hairy armadillo Chaetophractus nationi (Xenarthra, Cingulata, Dasypodidae) is a small, endangered armadillo that has long been suspected to represent a high-altitude variant of Chaetophractus vellerosus. Here, we report the 1st phylogenetic systematics assessment of hairy armadillos using morphological and molecular analyses of all described species with focus on the status of the Andean hairy armadillo. Multivariate analyses of shape variation based on 3-dimensional landmark coordinates of skulls allowed a clear differentiation of each species with the exception of C. vellerosus and C. nationi, within which only a latitudinal and/or altitudinal gradient in size was apparent. Moreover, analyses of mitochondrial DNA control region (D-loop) revealed a single C. nationi haplotype that appeared to be identical with a C. vellerosus haplotype from Argentina. Identical sequences in C. vellerosus and C. nationi were also observed for 3 of the 5 non-coding nuclear markers investigated. Based on these data, we propose that C. nationi should be considered as a synonym of C. vellerosus. However, this taxonomic change should not preclude the protection of the high-altitude Bolivian populations that are steadily declining because of their overexploitation for traditional purposes. Finally, phylogenetic analyses of euphractine armadillos based on a combination of 6 non-coding nuclear markers and 2 nuclear exons suggest the paraphyly of the genus Chaetophractus, with C. vellerosus being more closely related to Zaedyus pichiy than to C. villosus.

Here, we review population genetic, phylogeographic, and phylogenetic studies on xenarthrans and show how this information fits in current discussions about patterns of diversification within the Neotropics. Specifically, we focus on how the genetic diversity of xenarthrans has been shaped by important historical processes such as Andean uplift, the Great American Biotic Interchange, and fluctuating linkages between the Amazon and Atlantic forests. We also describe latitudinal patterns of differentiation within the Atlantic forest and discuss how these might have been generated. Even with the modest amount of information currently available, our comparative analyses indicate 3 things: the Andes may have promoted events of intraspecific divergence for at least 2 xenarthran species; the biogeographic history of the Neotropical rain forests influenced the divergence of clades in sloths; and inter- and intra-specific genetic patterns reveal a very high diversity in xenarthrans, probably higher than currently recognized from morphological data. Finally, we highlight Xenarthra as an appropriate model for investigating biogeographic patterns in the Neotropics and also point to additional directions to be taken in future studies of this unique mammal group.

The pygmy three-toed sloth (Bradypus pygmaeus) has garnered much interest since being described in 2001 as a new species, which occurs on a single island, Escudo de Veraguas, Panama. Recent work has found that the species has a highly diverse eukaryotic community in its hair, activity, and sleep patterns markedly different from other three-toed sloths in the region, and that some individuals live in nonmangrove areas as well as in the mangroves on the island. This critically endangered species is being threatened by several factors, including habitat degradation due to timber harvesting, increased development, and collecting. An accurate understanding of the ecological needs of pygmy sloths is imperative to forming a comprehensive and successful conservation strategy.

The evolutionary relationships between Peromyscus, Habromys, Isthmomys, Megadontomys, Neotomodon, Osgoodomys, and Podomys are poorly understood. In order to further explore the evolutionary boundaries of Peromyscus and compare potential taxonomic solutions for this diverse group and its relatives, we conducted phylogenetic analyses of DNA sequence data from alcohol dehydrogenase (Adh1-I2), beta fibrinogen (Fgb-I7), interphotoreceptor retinoid-binding protein (Rbp3), and cytochrome-b (Cytb). Phylogenetic analyses of mitochondrial and nuclear genes produced similar topologies although levels of nodal support varied. The best-supported topology was obtained by combining nuclear and mitochondrial sequences. No monophyletic Peromyscus clade was supported. Instead, support was found for a clade containing Habromys, Megadontomys, Neotomodon, Osgoodomys, Podomys, and Peromyscus suggesting paraphyly of Peromyscus and confirming previous observations. Our analyses indicated an early divergence of Isthmomys from Peromyscus (approximately 8 million years ago), whereas most other peromyscine taxa emerged within the last 6 million years. To recover a monophyletic taxonomy from Peromyscus and affiliated lineages, we detail 3 taxonomic options in which Habromys, Megadontomys, Neotomodon, Osgoodomys, and Podomys are retained as genera, subsumed as subgenera, or subsumed as species groups within Peromyscus. Each option presents distinct taxonomic challenges, and the appropriate taxonomy must reflect the substantial levels of morphological divergence that characterize this group while maintaining the monophyletic relationships obtained from genetic data.

In fragmented areas, the persistence of different species depends on their ability to use the surrounding matrix either as a corridor or as a foraging habitat. We assessed how species richness and abundance of Neotropical bats differ among forest fragments and rubber plantations under different management regimes. Our study site was located in a heterogeneous agricultural area in the Atlantic Forest of Bahia, northeastern Brazil. By combining mist netting and acoustic monitoring as complementary techniques, we caught 28 phyllostomid species and recorded 21 aerial insectivorous species, which either forage in open space or close to forests. Open space species were equally abundant and diverse in all land use types. In contrast, assemblages of phyllostomid and aerial insectivorous forest species differed significantly among habitats, with the highest species richness recorded in forest fragments. We identified a number of forest specialists in forest fragments, which indicates a relatively intact bat fauna. In intensively used rubber-cacao plantation, we found surprisingly high bat abundance and diversity, despite the shortage of resources for bats. Our results also indicate that patches of secondary vegetation around rubber plantations are important landscape features for bats and might contribute to the persistence of highly diverse bat assemblages. We suggest that bats do not perceive plantations as a hostile matrix, but probably use them as corridors between forest fragments and patches of secondary vegetation.

The marsh rice rat (Oryzomys palustris) inhabits wetlands that are often fragmented and isolated by upland cover types. Persistence of marsh rice rat populations and metapopulations likely depends on their ability to enter and traverse the upland matrix, yet basic information, such as home-range size and landcover use patterns, is lacking. Our goal was to quantify home-range size and habitat selection by marsh rice rats in southern Illinois. Between March and November 2011, we radiocollared 21 male rice rats (8 subadults and 13 adults) that were each located 7 to 24 times each via triangulation and homing. We estimated home-range size, compared landcover composition within kernel home ranges to what was available in the surrounding landscape, and quantified daily movement distances. Mean (±SE) home ranges were 3.53 ± 0.66 ha based on 95% kernel isopleths and 1.85 ± 0.49 ha based on minimum convex polygons. Home ranges were largest for individuals followed in early summer, but home-range sizes were similar for adults and subadults. Rice rats' use of emergent wetland vegetation was greater than availability, indicating they preferred emergent wetlands habitat at the home-range level. However, upland cover types made up >40% of each home range, on average. Daily movements averaged 46.6 ± 3.4 m (maximum: 396 m), and rice rats were located up to 464 m from the nearest wetland. Based on by far the largest sample size (in individuals and locations per individual) available for space use of the marsh rice rat, our findings support the characterization of male rice rats as highly vagile and suggest that rice rats move through upland cover more frequently than previously described.

The status of several small carnivores in Asia remains poorly known because of the lack of rigorous population assessments. The leopard cat Prionailurus bengalensis is one such species assumed to be common and widespread within the Indian subcontinent. We conducted surveys using automated cameras to estimate densities and abundance of leopard cats in and around 4 protected reserves in the Western Ghats of India. A total effort of 16,736 camera-days across a 2,075-km² area resulted in 65 detections of 43 uniquely identified individuals. We estimated leopard cat densities using closed population spatial capture–recapture models under a Bayesian framework. Estimated density was highest in Bhadra Tiger Reserve at 10.45 (± 3.03 SD)/100 km² followed by 4.48 (± 1.31 SD)/100 km² in Biligiri Rangaswamy Temple (BRT) Tiger Reserve. The surveys yielded sparse data from Nagarahole and Bandipur reserves. High local densities in Bhadra and BRT were clustered around secondary, disturbed or partially modified forests and human-use areas. Our results provide information critical to the conservation of leopard cats, emphasizing the importance of maintaining habitat buffers and wildlife-permeable areas around protected reserves. Insights from our study highlight the potential of the Western Ghats landscape to serve as a long-term conservation area for leopard cats. Further, our study demonstrates the utility of spatially explicit capture–recapture methods for estimating populations of leopard cats, and may be applied to other threatened small carnivores that are uniquely identified from their morphological features.

Infectious diseases pose a significant threat to global biodiversity and may contribute to extinction. As such, establishing baseline disease prevalence in vulnerable species where disease could affect persistence is important to conservation. We assessed potential disease threats to endangered red wolves (Canis rufus) by evaluating regional (southeastern United States) disease occurrences in mammals and parasite prevalence in red wolves and sympatric coyotes (Canis latrans) in North Carolina. Common viral pathogens in the southeast region, such as canine distemper and canine parvovirus, and numerous widespread endoparasites could pose a threat to the red wolf population. The most prevalent parasites in red wolves and sympatric coyotes were heartworm (Dirofilaria immitis), hookworm (Ancylostoma caninum), and Ehrlichia spp.; several red wolves and coyotes were also positive for bacteria causing Lyme disease (Borrelia burgdorferi). Coyotes had a more species-rich parasite community than red wolves, suggesting they could harbor more parasites and act as a disease reservoir. Species identity and sex did not significantly affect parasite loads, but young canids were less likely to have heartworm and more likely to have high levels of endoparasites. Continued disease monitoring is important for red wolf recovery because low levels of genetic variability may compromise the wolves' abilities to combat novel pathogens from closely related species, such as domestic dogs and coyotes.

While livetrapping is a vital field research tool, it is not a completely unbiased method of sampling. Biased trapping arises during field endocrinological studies whenever hormone levels or response influence the probability of capture of a subject. We repeatedly captured wild, free-living adult degus (Octodon degus) from the same location over 12 days to determine whether individuals with a certain endocrine stress profile were more likely to be captured repeatedly than others. We measured baseline cortisol (CORT), stress-induced CORT, and negative feedback efficacy via a dexamethasone suppression test in adult male and lactating and nonlactating female degus upon initial capture. We successfully recaptured approximately half of the degus. None of the 3 indices of the stress response at initial capture predicted whether a degu would be recaptured. However, baseline CORT levels at 1st capture had a weak, negative relationship with the number of days between 1st and 2nd capture. Because most animals interpret capture and restraint as an acute stressor, we also analyzed the effect of recapture on the endocrine stress response. Baseline and stress-induced CORT concentrations were measured upon each subsequent recapture for up to 5 total captures. Upon subsequent recaptures, neither stress-induced CORT nor baseline CORT changed significantly. Additionally, individual stress-induced and baseline CORT titers were repeatable within our sample population. These findings suggest that livetrapping does not select for animals with certain endocrine stress profiles, and that degus fail to habituate to repeated capture and restraint stress.

In the west coast region of the United States, fishers (Pekania pennanti) exist in 2 remnant populations—1 in northern California and 1 in the southern Sierra Nevada, California—and 3 reintroduced populations (western Washington, southern Oregon, and northeastern California). The West Coast Distinct Population Segment of fishers encompassing all of these populations was proposed for listing as threatened by the U.S. Fish and Wildlife Service in October 2014. There are likely fewer than 500 total fishers in the southern Sierra Nevada population isolate, but empirical data on demographic rates, population size, and population growth are almost entirely lacking. Our goal was to estimate demographic parameters and current abundance of a fisher population at the north margin of the southern Sierra Nevada region. Radiocollared fishers were monitored from 2007 to 2013 to estimate survival and demographic rates, and camera traps were used to estimate population size based on detections of individual animals in a capture–mark–resight (CMR) framework. A Leslie matrix model was used to estimate a deterministic population growth rate (λ). Fisher abundance ranged from 48 animals in 2010 to 62 animals in 2012, whereas mean population density varied from 0.075 to 0.096 fishers/km². Reproductive status was determined for 89 of 93 total denning opportunities; denning and weaning rates were estimated at 84% and 70%, and litter size was 1.6 kits. We documented 8 den failures, mostly associated with predator attacks. Demographic rates in the study population were comparable to reports from elsewhere in California or Oregon, but the CMR-based population density was the lowest reported in the United States. The estimated λ for the population was 0.966 (range 0.786–1.155), which was in agreement with no indication of a positive or negative trend in population density. An encouraging result from sensitivity analyses was that minor improvements in fisher survival and fecundity, facilitated by proposed mitigation or management to reduce exposure to several agents of mortality, could improve λ to 1.06–1.09 over the longer term. We believe that the combination of a population growth rate slightly below 1.0, small population size and low density, multiple challenges to survival and reproduction, and damage to habitat from wildfires warrants concern for the viability of the fisher population in our study area, which may extend to the overall southern Sierra Nevada population if λ trends below 1.0 in other parts of the region. There is a need for continued monitoring and potential mitigation for threats to survival to assure continued presence of fishers in the southern Sierra Nevada, California.

The frequency of group fission and fusion is critical for understanding the evolution of sociality, as it measures group cohesiveness, which can confer a high fitness value on individuals who practice it. Variations in the frequency of fission and fusion can also reveal an individual's response to environmental changes. As fission–fusion group dynamics influence the risk of disease transmission, measuring it accurately may have implications for population management. Here, we extend a method to assess the frequency of fission and fusion from continuous monitoring of group composition. The former method was based on the variation in group size (i.e., party/subgroup size) within which marked individuals were successively recorded. Upon validation of the method here, we propose a correction, using the coefficient of variation in group size instead of the variation in group size. We performed our study on an enclosed herd of reindeer, Rangifer tarandus. All reindeer were tracked using Global Positioning System (GPS) collars and followed by direct observations. GPS collars allowed us to obtain accurate measures of the frequency of fission and fusion that we used to validate our models. The resulting method best described the temporal variation in fission and fusion frequency without the confounding effect of the variation in group size. This method can easily be applied to other populations where some individuals can be recognized and their group size repeatedly recorded. It will also help in quantifying the 2nd dimension of the fission–fusion group dynamics: the variation in group size.

The Sierra de Perijá is the northern extension of the Cordillera Oriental of the Andes and includes part of the border between Colombia and Venezuela. The population of small-eared shrews (Mammalia, Eulipotyphla, Soricidae, Cryptotis) inhabiting the Sierra de Perijá previously was known from only a single skull from an individual collected in Colombia in 1989. This specimen had been referred to alternatively as C. thomasi and C. meridensis, but a more precise definition of the known Colombian and Venezuelan species of Cryptotis has since excluded the Sierra de Perijá population from any named species. The recent collection of a specimen from the Venezuelan slope of Sierra de Perijá prompted us to re-evaluate the taxonomic status of this population and determine its relationship with other Andean shrews. Our examination of the available specimens revealed that they possess a unique suite of morphological and morphometrical characters, and we describe the Sierra de Perijá population as a new species in the predominantly South American C. thomasi species group. Recognition of this new species adds to our knowledge of this genus in South America and to the biodiversity of the Sierra de Perijá.

Climate change resulting in a reduction of alpine habitat is believed to pose a considerable risk to alpine-dependent species, including many marmots. Hoary marmots (Marmota caligata) range throughout much of the mountainous Pacific Northwest (PNW) and Rocky Mountains while the closely related Olympic and Vancouver Island marmots (M. olympus and M. vancouverensis, respectively) are restricted to small isolated regions of the PNW. The endemic Vancouver Island marmot is currently classified as Critically Endangered and the Olympic marmot has recently experienced dramatic population declines. Previous phylogenetic studies of PNW marmot species have had limited power as they focused on resolving interspecific relationships, implicitly assumed an absence of gene flow among currently recognized species, included relatively few individuals, and relied heavily or entirely on mitochondrial DNA. We sequenced 2 mitochondrial and 4 nuclear markers from 167 hoary, 4 Vancouver Island, and 5 Olympic marmots in order to investigate phylogenetic relationships and historic gene flow among these species. We recovered 2 monophyletic (and predominantly allopatric) mitochondrial clades of hoary marmots that are not sister groups. Instead, Vancouver Island marmots formed a monophyletic mitochondrial sister clade to 1 of the hoary marmot clades. Nuclear loci did not recover the 2 mitochondrial clades of hoary marmots and suggest that Vancouver Island marmots may have experienced mitochondrial introgression from coastal mainland hoary marmots. Additionally, our nuclear results suggest possible gene flow between hoary and Olympic marmots despite different chromosomal formulas. Rather than resolving what has previously been considered a straightforward 3-taxon phylogenetic question, our findings suggest a complicated history of rapid divergence of the 3 species followed by intermittent and possibly ongoing gene flow between hoary marmots and both Olympic and Vancouver Island marmots. These results therefore have significant implications for the conservation of the latter 2 species, both of which are conservation concerns.

Reintroduction of game species and augmentation of declining populations were carried out in many areas of Europe during the last century. In some cases, such actions have threatened the diversity of remnant endemic taxa, thus raising concerns for their conservation. The Italian peninsula hosts relict populations of native roe deer, which include the subspecies Capreolus capreolus italicus. Recent genetic investigations and historical information suggest that roe deer populations in Italy have different origins (native, introduced, and admixed). Here, we conducted genetic analyses in 3 areas of central Italy (provinces of Arezzo, Pisa, and Parma), each characterized by subareas containing roe deer with different genetic ancestries and zones of contact among them. We analyzed mitochondrial (control region) and nuclear (microsatellites) d