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23 November 2022 Crop rotational diversity alters the composition of stabilized soil organic matter compounds in soil physical fractions
Huan Tong, Meiling Man, Claudia Wagner-Riddle, Kari E. Dunfield, Bill Deen, Myrna J. Simpson
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Abstract

Crop rotational diversity is an important part of sustainable agricultural and soil management to improve crop yield and soil fertility including enhancing soil organic matter (SOM) stabilization. Because of the physical protection via interactions with soil minerals, SOM in mineral-associated fractions is believed to be longer-lived and more stable relative to SOM in particulate (light) fractions. However, it is still unclear how crop rotational diversity alters soil carbon distribution, composition and stabilization in soil physical fractions. To address this, we studied a 37 years’ agricultural site with different crop rotational diversity (from continuous corn or alfalfa up to four species (corn, soybean, winter wheat, and red clover)). Soil carbon analysis, targeted compound analysis and nuclear magnetic resonance spectroscopy methods were used to obtain the distribution and degradation of SOM components in light and mineral-associated (F53–2000 µm, F2–53 µm, and F<2 µm) fractions. Higher soil organic carbon (SOC) concentrations were observed in F<2 µm with relatively high diversified crop rotations (three and four types of crops) compared to monoculture or two crops in the rotations, which suggests that carbon storage is enhanced in mineral-stabilized pools. Higher concentrations of long-chain aliphatic compounds as well as increased accumulation and preservation of lignin-derived compounds in fine aggregates (<53 µm) were also observed with relatively high diversified crop rotations. Overall, the increased concentration and preservation of specific SOM compounds as well as increased SOC in finer mineral-associated fractions (<53 µm) suggests that crop rotational diversity may enhance the long-term stability of SOM in agroecosystems.

Introduction

It is well established that soil organic matter (SOM) is critical for the stabilization of soil structure and maintenance of soil health and fertility (Soman et al. 2017; Srivastava et al. 2019; Yang et al. 2019). Continuously cropping with monoculture can lower soil organic carbon (SOC) concentration and soil fertility, thus decreasing plant productivity (Paustian et al. 2000; Lal 2004; Ren et al. 2018). In contrast, diversified crop rotations may maintain soil fertility and enhance crop yields (Reeves 1997; Gagnon et al. 2019; Agomoh et al. 2021; Janovicek et al. 2021). Some studies reported that high crop rotational diversity can build SOC via increased crop productivity and litter inputs to soil (West and Post 2002; Ogle et al. 2003; Hermle et al. 2008; Bai et al. 2018; Maiga et al. 2019). There is growing evidence that SOC in light fractions is less protected and more accessible for biodegradation (Six et al. 2002; Tonon et al. 2010; Poeplau et al. 2018; Haddix et al. 2020). In contrast, SOC in mineral-associated fractions is longer lived in the soil due to reduced availability for microbial decomposition (Jastrow et al. 2007; Sollins et al. 2009; Angst et al. 2017, 2018). Studies have also reported that diversified crop rotations may (Garcia et al. 2013; Moreira et al. 2018) or may not (Zotarelli et al. 2007) enhance SOC concentrations in light fractions in the short-term (<10 years). However, the SOC concentrations in light fractions were consistently increased in the long-term (>10 years) (Garcia et al. 2013; Li et al. 2018; Poffenbarger et al. 2020). In contrast, SOC stabilized in mineral-associated fractions reflected varied results after long-term diversified crop rotations (Freixo et al. 2002; Soon et al. 2007; Li et al. 2018; Moreira et al. 2018; Poffenbarger et al. 2020; Zhang et al. 2020). For example, some studies reported enhanced SOC concentrations in stabilized carbon pools (Li et al. 2018; Zhang et al. 2020), but others did not observe significant changes with long-term crop rotational diversity (Freixo et al. 2002; Poffenbarger et al. 2020). Therefore, applying diversified crop rotations to enhance SOC stability in a long-term manner still needs to be further explored to better understand the benefits to agroecosystems.

High crop rotational diversity has also been reported to alter SOM molecular biogeochemical dynamics and stability (Lehmann et al. 2020; Savarese et al. 2021; Audette et al. 2021). For example, diversified crop litter inputs may stimulate microbial diversity and population, which subsequently altered SOM composition and stability (Lange et al. 2015; Audette et al. 2021). The distribution of SOM constituents may also be altered with varied compositional inputs of crop species. For example, leguminous biomass contributes more O-alkyl containing groups but less aromatics (Arshad et al. 2011); corn contributes less aliphatic lipids (Savarese et al. 2021); and wheat contributes more root-derived inputs (Agomoh et al. 2021). Also, high crop rotational diversity was found to shift SOM composition toward more long-lived components, such as aromatic carbons and aliphatic lipids (Zhao et al. 2021; Audette et al. 2021), and exhibited more preserved SOM in the long-term (>10 years) (Savarese et al. 2021; Audette et al. 2021). Some of the slowly decomposed compounds, namely long-chain aliphatic lipids, have been reported to accumulate in finer fractions via interactions with soil minerals, which were protected against microbial decomposition (Baldock et al. 1992; Guggenberger et al. 1995; Six et al. 2002; Helfrich et al. 2006; Tonon et al. 2010; Clemente et al. 2011; Saidy et al. 2013; Angst et al. 2017). Angeletti et al. (2021) measured SOM composition via solid-state 13C nuclear magnetic resonance (NMR) spectroscopy and observed lower SOM decomposition states (alkyl/O-alkyl carbon) in mineral-associated aggregates with diversified crop rotations. This suggests that there may be significant benefits to using this management practice. However, more information is required to better understand how long-term crop rotational diversity alters SOM composition in different soil fractions.

Our previous study, which focused on analyzing whole soil samples from the same site, found changes in the distribution and degradation of SOM constituents with long-term crop rotational diversity despite minor differences in SOC concentrations (Man et al. 2021). This study highlighted the importance of molecular-level assessment of SOM biogeochemistry with land management practice (Man et al. 2021). For instance, higher concentrations of long-chain aliphatic lipids (n-alkanoic acids, n-alkanols, and hydrolyzable aliphatic lipids derived from cutin and suberin) were observed after long-term crop rotations with relatively high diversification (contained three or four types of crops) compared to low diversification and crop monoculture (Man et al. 2021). However, it is documented that carbon dynamics and biogeochemical cycling in light and mineral-associated SOM fractions are important for soil carbon stabilization (Guggenberger et al. 1995; Tonon et al. 2010; Clemente et al. 2011; Saidy et al. 2013; Lajtha et al. 2014; Angst et al. 2017; Angeletti et al. 2021), but this has not been explored in detail with the diversified crop rotations. The hypotheses of this study are that: (i) long-term highly diversified crop rotations increase the SOC concentrations in both light and mineral-associated fractions and (ii) highly diversified crop rotations accumulate more slowly decomposed components (e.g., long-chain aliphatic components) in mineral-associated fractions due to the organo-mineral interaction. The objective of this study is to assess the long-term effect of diversified crop rotation on the distribution and stabilization of SOM in fractions. To achieve this objective and test these hypotheses, soil samples from six different crop rotations from a 37 years’ agriculture site at the Elora Research Station (Ontario, Canada) were fractionated and analyzed using elemental analysis and advanced molecular SOM characterization methods.

Materials and methods

Soil sampling, fractionation and carbon and nitrogen content analysis

Soil samples (0–10 cm) were collected from a long-term crop rotation experiment established in 1980 at the Elora research station, Ontario, Canada (Congreves et al. 2015). The soil at Elora was silty loam soil (Congreves et al. 2015). Samples were collected from six different crop rotations of 4 years’ duration each, including continuous alfalfa ((Medicago sativa L.), AAAA), continuous corn ((Zea mays L.), CCCC), corn–corn–alfalfa–alfalfa (CCAA), corn–corn–soybean–soybean ((Glycine max (L.) Merr.), CCSS), corn–corn–soybean–winter wheat ((Triticum aestivum L.), CCSW), and corn–corn–soybean–winter wheat with red clover ((Trifolium pretense L.), CCSWRC), under conventional tillage. Soil samples were collected before the harvest in October 2017. It was the second year of corn or alfalfa planting in the 4-year duration. The average tissue quality of carbon inputs and estimated SOC stabilization efficiency (by the ratio of SOC stock to total carbon inputs) of each crop rotation has been published in King et al. (2020). The collected soil samples were freeze-dried and passed through a 2 mm sieve. Then, soil samples from the same crop rotation treatment were combined from four field replicates as described in Man et al. (2021) before fractionation. Four different soil fractions were separated based on the density and the aggregate sizes. Briefly, approximately 250 g of sample was mixed with 500 mL 1.7 g/mL sodium iodide solution and mixed for 24 h. The mixture was centrifuged at 1500 rpm for 50 min (Clemente et al. 2011), the supernatant was collected and filtered using a GF/F glass microfiber filter (0.7 µm cut off; Whatman, Kent, UK), and then rinsed with deionized (18 MΩ cm at 25 °C) water. This step isolated the light fraction which was then transferred into tubes and freeze-dried for further analyses. The soil was not physically disrupted before further fractionation to preserve aggregate association, which are more representative of the biogeochemical function of SOM (Sollins et al. 2009). The residual heavy fraction was passed through a 53 µm sieve with deionized water. The soil aggregate fraction which was retained on the sieve was collected (F53–2000 µm). The fraction that passed through the sieve was then separated to two additional aggregate sizes (F2–53 µm and F< 2 µm) based on Stokes’ law and sedimentation rates. The suspended portion (F<2 µm) was collected by aspiration and mixed with a 0.5 M calcium chloride solution to promote flocculation and avoid the loss of ultrafine particles. Deionized water was then used to rinse excess calcium chloride solution. All fractions were freeze-dried, ground and stored at room temperature for further analyses. Soil carbon and nitrogen concentrations of each fractionated sample were analyzed using a Thermo Flash 2000 Elemental Analyzer (Thermo Scientific, Hudson, NH, USA). Samples were combusted at 950 °C under a stream of oxygen gas. The concentration of SOC and nitrogen was reported as an average of duplicate analyses.

Solid-state 13C nuclear magnetic resonance (NMR) spectroscopy sample preparation and analysis

Three soil aggregate size fractions (F53–2000 µm, F2–53 µm and F<2 µm) were repeatedly extracted with hydrofluoric acid (HF acid; 10% by volume in deionized water) to concentrate organic matter and decrease the concentration of paramagnetic materials which improves the signal to noise ratio in solid-state 13C NMR analysis (Schmidt et al. 1997; Mitchell et al. 2018). Samples were rinsed with deionized water after HF treatment to remove excess salts and freeze-dried. Light fraction samples were not HF treated due to the low yield and high SOC concentration, which did not require pretreatment before NMR analyses. Samples were packed into a 4 mm zirconium rotor with a Kel-F cap and then characterized by solid-state 13C cross-polarization magic angle spinning (CP-MAS) NMR spectroscopy. The NMR spectra were acquired using a 500 MHz Bruker BioSpin Avance III spectrometer (Bruker BioSpin, Rheinstetten, Germany) equipped with a 4 mm H–X MAS probe, using an 11 kHz spinning speed, a ramp-CP contact time of 1 ms, a recycle delay of 2 s with 40960 scans for light fractions and F<2 µm and a recycle delay of 1 s with 61440 scans for F53–2000 µm and F2–53 µm. Spectra were processed using a line broadening of 150 Hz. Four main chemical shift regions were used for the integration of 13C NMR spectra and normalized to the total signal using Analysis of Mixtures (AMIX; v. 3.9.15) software (Bruker BioSpin, Rheinstetten, Germany): (i) alkyl carbon (0–50 ppm; from cutin, suberin, aliphatic side chains and lipids); (ii) O-alkyl carbon (50-110 ppm; from carbohydrates, peptides and methoxyl carbon in lignin); (iii) aromatic and phenolic carbon (110–165 ppm; from lignin and amino acids observed in peptides and black carbon) and (iv) carboxyl and carbonyl carbon (165–220 ppm; from fatty acids and amino acids in peptides and other degradation products) (Baldock et al. 1992; Preston et al. 1997; Simpson et al. 2008). The ratio of alkyl/O-alkyl carbon was calculated by dividing the integrated regions of alkyl carbon and O-alkyl carbon to establish the relative degradation stage of SOM in each fraction (Baldock et al. 1992; Baldock and Preston 1995; Preston et al. 1997; Kögel-Knabner 1997; Simpson and Simpson 2012).

Targeted soil organic matter (SOM) compounds extraction and analysis with gas chromatography – mass spectrometry (GC–MS)

Targeted SOM compounds with various microbial- and plant-derived sources were isolated and quantified using gas chromatography – mass spectrometry (GC–MS). Soil fractions were sequentially extracted in duplicate using solvent (dichloromethane/methanol), base hydrolysis and copper (II) oxide (CuO) oxidation extractions, which are described in detail in the Appendix A (Otto and Simpson 2005, 2006a, 2006b). The isolated compounds (including aliphatic lipids, steroids, as well as the cutin-, suberin-, and lignin-derived compounds) from each extraction step were analyzed by GC–MS using established methods (Otto and Simpson 2005, 2006a, 2006b). Briefly, soil fractions (light fraction 0.2 g; F53–2000 µm and F2–53 µm 15 g and F<2 µm 3 g) were solvent-extracted sequentially with dichloromethane, dichloromethane and methanol mixture (1:1 by volume), and methanol to isolate the solvent-extractable SOM components in each fraction (Otto and Simpson 2005). Air-dried solvent extracted samples were then base hydrolyzed with methanolic potassium hydroxide (KOH, 1 M in methanol) solution in Teflon lined bombs at 100 °C for 3 h to obtain ester-bound lipids (Goñi and Hedges 1990b; Otto and Simpson 2006a). The base hydrolyzed samples were then oxidized with 1 g CuO, 100 mg ammonium iron (II) sulphate hexahydrate [Fe(NH4)2(SO4)2·6H2O] and 15 mL of sodium hydroxide (NaOH, 2 M in deionized water) in Teflon lined bombs at 170 °C for 2.5 h (Hedges and Ertel 1982; Hedges et al. 1988; Otto and Simpson 2006b). Then the supernatants were solid-phase extracted using HLB SPE cartridges (Waters Limited, Mississauga, ON, Canada) to obtain the lignin-derived compounds (Pinto et al. 2010).

All the soil extracts were derivatized before GC–MS analysis so that the targeted compounds are more volatile and amenable to GC separation and analysis (Otto and Simpson 2005, 2006a, 2006b). Compounds isolated via solvent and CuO oxidation extraction were derivatized using N, O-bis(trimethylsilyl)trifluoroacetamide and pyridine. Base hydrolysis extraction products were first methylated using N, N-dimethylformamide dimethyl acetal and then derivatized with N, O-bis(trimethylsilyl)trifluoroacetamide and pyridine. The derivatized samples were analyzed by GC–MS using an Agilent 7890B gas chromatograph equipped with a 5977B mass spectrometer operated with electron impact (70 eV) ionization. Samples were diluted with hexane and 1 µL of each sample was injected using an Agilent 7603 A automatic sampler at an inlet temperature of 280 °C onto an HP-5MS fused silica capillary column (30 m × 0.25 mm i.d. × 0.25 µm film thickness). The oven temperature gradient started at 65 °C for 2 min, followed by an increase of 6 °C min−1 to 300 °C, and then a 20 min isothermal hold. The flow rate of carrier gas (helium) was 1 mL min−1. Data acquisition was performed using Agilent Mass Hunter GC–MS Acquisition (version B.07.03.2129) and data were processed using Agilent Enhanced ChemStation software (version E.02.02.1431). The identification of the targeted compounds was obtained by comparing the mass spectra with Wiley Registry (9th edition) plus the National Institute of Standards and Technology (NIST) mass spectral databases, the mass spectral library of soil compounds and published mass spectra. External standards were used to quantify the concentration of targeted compounds from extractions (Otto and Simpson 2005, 2006a, 2006b). Tetracosane, 1-docosanol, methyl tricosanoate and cholesterol were used as external standards for solvent extractable compounds. Methyl tricosanoate was used as an external standard for cutin- and suberin-derived compounds, and vanillic acid and vanillin were used as external standards for lignin-derived phenols.

Solvent extractable compounds included: short-chain aliphatic lipids (<C20, n-alkanes, n-alkanols, and n-alkanoic acids), long-chain aliphatic lipids (≥C20, n-alkanes, n-alkanols, and n-alkanoic acids), and cyclic lipids (cholesterol, ergosterol, campesterol, stigmasterol, sitosterol and stigmastanol) (Otto and Simpson 2005). Cutin-derived compound concentrations (ΣC) were calculated as the sum of mid-chain hydroxy C14, C15, C17 acids, C16 mono- and dihydroxy acids and diacids (Otto and Simpson 2006a). The ω-hydroxy C16 acids (ω-C16) are relatively more persistent than other fatty acids, thus the increased abundance of ω-C16 in C16 hydroxy acids (ω-C16/ΣC16) is indicative of cutin decomposition (Otto and Simpson 2006a). The concentration of suberin-derived compounds (ΣS) was calculated as the sum of long-chain ω-hydroxyalkanoic acids (C20–C32), α,ω-diacids (C20–C32) and 9,10-epoxy-18-hydroxy C18 dioic acid (Otto and Simpson 2006a). Suberin- or cutin-derived compounds concentration (ΣSvC) was calculated as the sum of ω-hydroxyalkanoic acids C16, C18, C18 di- and trihydroxy acids, 9,10-epoxy-ω-hydroxy C18 acid, and α, ω-diacids C16, C18 (Otto and Simpson 2006a). The ratio of suberin- to cutin-derived compounds (suberin/cutin ratio, which was calculated as (ΣS+ΣSvC)/(ΣC+ΣSvC)) informs root-derived (ratio > 1) or leave-derived (ratio < 1) sources (Otto and Simpson 2006a). The concentrations of lignin-derived phenols were calculated as the sum of cinnamyl (p-coumaric acid and ferulic acid), syringyl (syringic acid, syringaldehyde and acetosyringone), and vanillyl (vanillic acid, vanillin and acetovanillone) phenols (Goñi and Hedges 1990a; Otto and Simpson 2006b). Ratios of syringyl to vanillyl (syringyl/vanillyl) phenols versus the ratios of cinnamyl to vanillyl (cinnamyl/vanillyl) phenols can discriminate different lignin sources (Hedges and Ertel 1982; Hedges et al. 1988; Goñi and Hedges 1990a; Otto and Simpson 2006b). The oxidation state of lignin was determined by the acid to aldehyde ratios of two lignin monomer classes, vanillyl ((Ad/Al)v) and syringyl ((Ad/Al)s), which increase with progressive degradation (Hedges et al. 1988).

Statistical analyses

Statistical analyses were performed using IBM SPSS Statistics version 22. Independent samples t-test was used to examine the differences in soil chemical properties (i.e., soil carbon and nitrogen contents as well as concentration and degradation of groups of SOM components) between crop rotations in each soil fraction with a significant level of P < 0.05 and n = 2. The independent samples t-test analysis was also used to examine the significant differences (P < 0.05) of SOM characteristics (e.g., groups of SOM components concentration and degradation) between relatively low (AAAA, CCCC, CCAA, and CCSS, in total n = 8) and high (CCSW and CCSWRC, in total n = 4) crop rotational diversity in each soil fraction. Linear regression was used to evaluate the relationships of the SOM characteristics between whole soil and fractionated samples (including SOC concentration, carbon to nitrogen (C: N) ratio, the relative contribution of different functional groups and alkyl/O-alkyl carbon ratio from 13C NMR spectroscopy, targeted compounds concentration and the degradation proxies for specific groups).

Results

Soil carbon and nitrogen analysis

The mass recovery of samples from different crop rotations was greater than 97% (Table A1). The carbon recovery of the samples ranged from 86% to 95% (Table A1). The SOC concentration was highest in the light fractions followed by the F<2 µm, F53–2000 µm to F2–53 µm fractions (Table 1). Higher SOC concentrations were observed in light and F<2 µm fractions compared to whole soil (Table 1). Within the same soil fraction, SOC concentrations from different crop rotations exhibited significant differences (P < 0.05, Table 1). For example, the SOC concentrations in light fractions were significantly different between crop rotations (Table 1). Within the same mineral fraction (F53–2000 µm, F2–53 µm or F<2 µm), there were fewer significant differences observed between rotations compared to the light fractions. The SOC concentrations in mineral fractions (F53–2000 µm, F2–53 µm and F<2 µm) with the AAAA treatment were the highest compared to other crop rotations (Table 1). Significant differences were observed in SOC concentrations in light fractions and F2–53 µm between relatively high and low crop rotational diversities (Table 2). Higher SOC concentrations were observed in light fractions from relatively high diversified crop rotations (CCSW and CCSWRC) and in F2–53 µm from low diversified crop rotations (AAAA, CCCC, CCAA and CCSS; Table 2). The C: N ratios decreased from light fractions, F53–2000 µm, F2–53 µm to F<2 µm among all crop rotations whereas the C: N ratio of the unfractionated soil samples was only higher than F<2 µm ratios.

Table 1.

Soil organic carbon (SOC) concentration (with the unit g OC/kg soil for whole soil and g OC/kg fraction for soil fractions) and carbon to nitrogen (C: N) ratios (standard error from duplicate samples) of F53–2000 µm, F2–53 µm, F<2 µm, and light fraction was compared to whole soil (Man et al. 2021).

cjss-2022-0058_tab1.gif

Table 2.

Soil organic carbon (SOC) concentration, carbon to nitrogen ratio, the relative contribution of alkyl, O-alkyl, aromatic and phenolic and carboxyl and carbonyl carbon, alkyl/O-alkyl carbon ratio, and specific groups of compounds (solvent extractable compounds, cutin- and/or suberin-derived compounds, and lignin-derived phenols) concentrations (which were normalized to SOC concentration of fractions, µg/g OC) and degradation between relatively low (AAAA, CCCC, CCAA and CCSS; mean ± standard error) and high diversified (CCSW and CCSWRC; mean ± standard error) crop rotations.

cjss-2022-0058_tab2.gif

Solid-state 13C nuclear magnetic resonance (NMR) analysis

The NMR spectra from all crop rotations exhibited similar chemical signatures (Fig. A1) but different abundances of SOM components (Table 3). Alkyl carbon was relatively higher in the F<2 µm (29%–31%) than in other fractions analyzed (Table 3). The relative abundance of O-alkyl carbon were observed to be higher in F53–2000 µm (45%–46%) and F2–53 µm (42%–43%) than in F<2 µm (27%–32%). The highest relative contribution of aromatic and phenolic carbon was observed in light fractions (20%–30%) and the lowest relative contribution was found in F<2 µm (16%–18%). The highest relative abundance of carboxylic and carbonyl carbon was in F<2 µm (22%–26%) and lowest was in F53–2000 µm (8%–9%) across crop rotations. The relative degradation state of SOM (alkyl/O-alkyl carbon), which increases with progressive organic matter degradation (Baldock et al. 1992; Preston et al. 1997; Kögel-Knabner 1997), was higher from F53–2000 µm, F2–53 µm to F<2 µm. The light fraction had the lowest alkyl/O-alkyl carbon ratio compared to mineral-bound fractions. The alkyl/O-alkyl carbon ratio of F<2 µm was closer to the ratio of the whole soil than other fractions (Table 3).

Table 3.

Relative contribution (%) of alkyl (0–50 ppm), O-alkyl (50–110 ppm), aromatic and phenolic (110–165 ppm) and carboxyl and carbonyl (165–220 ppm) carbon (Baldock et al. 1992; Preston et al. 1997; Simpson et al. 2008) integrated from solid-state 13C NMR spectra with the alkyl/O-alkyl carbon ratios (Baldock and Preston 1995; Preston et al. 1997; Kögel-Knabner 1997; Simpson and Simpson 2012) from whole soil (Man et al. 2021) and different soil fractions.

cjss-2022-0058_tab3.gif

Within the same fraction class, similar trends of the relative contribution of groups of SOM were observed, except for light fractions and F<2 µm with monoculture crops (AAAA and CCCC). In diversified crop rotations, the relative contribution of SOM components from light fraction samples decreased from O-alkyl carbon, aromatic and phenolic carbon, alkyl carbon to carboxyl and carbonyl carbon (Table 3). The AAAA light fraction had relatively higher alkyl carbon (23%) than aromatic and phenolic carbon (20%), and the CCCC had slightly higher carboxyl and carbonyl carbon (17%) than alkyl carbon (16%). In F<2 µm, the relative contribution of components from high to low was alkyl carbon, O-alkyl carbon, carboxyl and carbonyl carbon and aromatic and phenolic carbon for samples from diversified crop rotations (Table 3). AAAA and CCCC had relatively higher O-alkyl carbon (32%) than alkyl carbon (29%–30%) in the F<2 µm.

Targeted soil organic matter (SOM) compounds analysis by gas chromatography – mass spectrometry (GC–MS)

The concentration of solvent extractable compounds (n-alkanes, n-alkanols, n-alkanoic acids and steroids) differed among soil fractions (Fig. 1). Higher concentrations of plant-derived steroids and n-alkanoic acids were observed in light fractions and F53–2000 µm in comparison to F2–53 µm and F<2 µm. The concentrations of n-alkanoic acids and plant-derived steroids in light fractions were much higher than in the unfractionated soil (Fig. 1). In contrast, n-alkane and n-alkanol concentrations were higher in F2–53 µm and F<2 µm than in light fraction and F53–2000 µm for all crop rotations (Fig. 1). F<2 µm contained a much higher concentration of n-alkanols than the whole soil (Fig. 1). The concentrations of long-chain n-alkanes and n-alkanols (≥C20) in F53–2000 µm and soil samples were inversely correlated (Fig. A2). Positive linear correlations were observed between concentrations of long-chain n-alkanes and n-alkanols (≥C20) in F2–53 µm and whole soils across crop rotations (Fig. A2). N-alkanes, n-alkanols and steroids from all fractionated samples were predominantly plant-derived (≥C20, Fig. 1 and Table A2). For the light fractions, F53–2000 µm and F2–53 µm, the main contribution of n-alkanoic acids are microbial-derived compounds (<C20,Fig. 1 and Table A2) for all crop rotations.

Fig. 1.

The concentrations of solvent extractable compounds (n-alkanes, n-alkanols, n-alkanoic acids and steroids, which the concentrations were normalized to soil organic carbon content of whole soil or fractions) among different crop rotational diversity within the whole soil (Man et al. 2021), light fractions, F53–2000 µm, F2–53 µm and F<2 µm (error bars indicate the standard error, n = 3 for whole soil (Man et al. 2021) and n = 2 for fraction samples). The concentration ranges on the y-axis were different for each graph. AAAA, CCCC, CCAA, CCSS, CCSW, and CCSWRC represent continuous alfalfa, continuous corn, corn–corn–alfalfa–alfalfa, corn–corn–soybean–soybean, corn–corn–soybean–winter wheat, and corn–corn–soybean–winter wheat with red clover, respectively.

cjss-2022-0058_f1.jpg

Fig. 2.

The distribution of (a) cutin-derived compounds and (b) suberin-derived compounds concentrations (which were normalized to soil organic carbon content of whole soil or fraction), (c) cutin degradation state and (d) suberin/cutin ratio among varied crop rotational diversities in the whole soil (Man et al. 2021), light fraction, F53–2000 µm, F2–53 µm, and F <2 µm (error bars indicate standard error, n = 3 for whole soil (Man et al. 2021) and n = 2 for fraction samples). AAAA, CCCC, CCAA, CCSS, CCSW, and CCSWRC represent continuous alfalfa, continuous corn, corn–corn–alfalfa–alfalfa, corn–corn–soybean–soybean, corn–corn–soybean–winter wheat, and corn–corn–soybean–winter wheat with red clover, respectively.

cjss-2022-0058_f2.jpg

Within the same fraction class, a few solvent extractable compound concentrations in relatively high diversified (more than two crop species) crop rotations were significantly different compared to low diversified (monoculture or two crop species) crop rotations (P < 0.05, Table 2). In light fractions, concentrations of long-chain aliphatic lipids, n-alkanes, and n-alkanols in highly diversified crop rotations (CCSW and CCSWRC) were significantly lower than in low diversified crop rotations (AAAA, CCCC, CCAA, and CCSS; P < 0.05, Table 2). The plant-derived steroids and cyclic lipids concentrations in relatively high diversified crop rotations (CCSW and CCSWRC) were higher than the concentrations in low diversified crop rotations (AAAA, CCCC, CCAA, and CCSS) in F53–2000 µm and F2–53 µm (Table 2). AAAA exhibited the most distinctive results compared to other crop rotations within the same fraction class or in soil samples (Fig. 1). For example, AAAA exhibited higher concentrations of long-chain aliphatic lipids (≥C20) in the light fraction and F53–2000 µm than other crop rotations (Table A2). Significantly higher concentrations of total n-alkane and long-chain n-alkanes (≥C20) of AAAA in F53–2000 µm (P < 0.05) but lower in F2–53 µm or F<2 µm than in other crop rotations were observed (Table A2). The concentration of short-chain n-alkanols (<C20) of AAAA in the light fraction was higher than other crop rotations (P < 0.05, Table A2), and long-chain n-alkanols (≥C20) and total n-alkanols concentrations of AAAA in F53–2000 µm were higher than other crop rotations (P < 0.05, Table A2).

Higher concentrations of cutin- and suberin-derived compounds were observed in F<2 µm than in other fractions or whole soil among different crop rotations (Figs. 2a and 2b). Positive correlations were observed between suberin-derived and suberin- and cutin-derived compounds concentrations in F<2 µm and in whole soil (Fig. A2). Samples from F<2 µm had a relatively lower cutin degradation state (ω-C16/ΣC16) compared to other fractions for the majority of crop rotations, but this fraction was more degraded than whole soil (Fig. 2c). The suberin/cutin ratios varied in fractions across crop rotations but were mostly lower than the ratios of soil (Fig. 2d). Lower concentrations of suberin- and cutin-derived compounds with significance (P < 0.05) were observed in relatively high diversified crop rotations (CCSW and CCSWRC) compared to low diversity (AAAA, CCCC, CCAA and CCSS) only in the light fractions and F53–2000 µm (Table 2). The concentrations of suberin- and cutin-derived compounds also varied with crop species in the F<2 µm. Crops containing alfalfa (AAAA and CCAA) had relatively lower suberin-derived compounds and higher cutin-derived compounds than soybean-containing treatments (CCSS, CCSW and CCSWRC; Table A3) in the F<2 µm.

Identified and quantified lignin-derived phenols (Table A4) included: cinnamyl (p-coumaric acid and ferulic acid, Fig. 3a), syringyl (syringic acid, syringaldehyde and acetosyringone, Fig. 3b), and vanillyl (vanillic acid, vanillin, acetovanillone, Fig. 3c) classes (Goñi and Hedges 1990a;Otto and Simpson 2006b). The total concentration of lignin-derived phenols (sum of vanillyl, syringyl and cinnamyl compounds) decreased from light fraction, F2–53 µm, F53–2000 µm, to F<2 µm (Fig. 3d). The total concentrations of lignin-derived phenols in the light fraction were similar to that of the whole soil (Fig. 3d). Positive correlations were observed between the total concentration of lignin-derived phenols in the unfractionated soil and light fraction, as well as in the soil and F2–53 µm (Fig. A2). The distribution of phenols in different fractions across crop rotations was further examined using plots of syringyl/vanillyl versus cinnamyl/vanillyl phenols (Fig. 4). The ratios of syringyl/vanillyl and cinnamyl/vanillyl phenols have been used to assess the origin of lignin (i.e., gymnosperm or angiosperm wood, non-woody vascular plant tissues) (Ertel and Hedges 1984; Goñi et al. 2000; Otto and Simpson 2006b) and exhibit a range of lignin-derived phenol ratios (Fig. 4) that are consistent with non-woody angiosperm sources. Compared to the unfractionated soil, there was a greater separation of lignin-derived phenol distributions in fractions across crop rotations, especially in F2–53 µm and F<2 µm (Fig. 4). Relatively higher cinnamyl/vanillyl phenols ratios of samples from light fraction and F53–2000 µm than the other two fractions were observed, but the syringyl/vanillyl phenols ratios were similar among fractions and with the whole soil (Fig. 4). Both oxidation state proxies ((Ad/Al)v and (Ad/Al)s) decreased from F<2 µm, F2–53 µm, F53–2000 µm to light fraction (Figs. 3e and 3f), except for the F2–53 µm sample of CCSS. The degradation state of lignin-derived phenols of the unfractionated soil was at a similar level with F2–53 µm for the majority of crop rotations (Figs. 3e and 3f). Within the same soil fraction, lignin phenol distributions varied across crop rotations, especially between monoculture and diversified crop rotations (Fig. 4). Compared to monoculture treatments (AAAA and CCCC), the distributions of phenols (syringyl/vanillyl versus cinnamyl/vanillyl phenol ratios) from diversified crop rotations were less distinct from each other (Fig. 4). The total lignin-derived phenol concentrations were higher in relatively high diversified crop rotations (CCSW and CCSWRC) than in low diversified crop rotations (AAAA, CCCC, CCAA, and CCSS) in light fraction, F53–2000 µm and F2–53 µm (Table 2). Both oxidation state proxies ((Ad/Al)v and (Ad/Al)s) in F2–53 µm were higher in low diversified crop rotations (Table 2).

Discussion

In this study, higher SOC concentrations were observed in light fractions and F<2 µm compared to the whole soil (Table 1). The light fraction represents the biogeochemically active carbon pool where the SOM components are less protected and more readily available for decomposition (Six et al. 2002; Tonon et al. 2010; Poeplau et al. 2018; Haddix et al. 2020). In contrast, the mineral-associated fine fractions (F2–53 µm and F<2 µm) contain carbon that is mainly stabilized via organo-mineral association (Jastrow et al. 2007; Sollins et al. 2009; Angst et al. 2017, 2018). In the light fractions and F<2 µm, higher SOC concentrations were observed in relatively high (more than two crop species) diversified crop rotations than in low diversified crop rotations (monoculture or two crop species, Table 2). These results suggest that the SOC concentration is enhanced with diversified crop rotations not just in the biogeochemically active carbon pool but also in the mineral-stabilized pool, which is consistent with the first hypothesis. The SOC concentrations in light fractions were significantly higher in relatively high crop rotational diversity than low diversity (Table 2). The SOC concentrations in light fractions also exhibited more variance across crop rotations (which were significantly different amongst crop rotations) than in other fractions (Table 1). These results indicate that the SOC concentrations in light fractions might be more sensitive to different crop rotations than in other fractions. This may be due to the enrichment of organic residues in light fractions which are in the early stages of decomposition and are not bound to minerals (Gregorich et al. 2006) and thus are more sensitive to crop input changes (Yang et al. 2012; Angst et al. 2018; Maiga et al. 2019; Zhang et al. 2020). Within stabilized carbon pools (mineral-associated fractions), targeted compound analyses showed increased concentrations of long-chain aliphatic compounds in fine fractions with relatively high crop rotational diversity. Positive linear correlations were observed between the concentrations of long-chain n-alkanols and n-alkanes (≥C20) in F2–53 µm and soil, as well as between the concentration of suberin-derived and suberin- and cutin-derived compounds in F<2 µm and soil (Fig. A2), suggesting that these components accumulate in fine aggregate sizes (F2–53 µm and F<2 µm). These results are consistent with other studies that reported long-chain aliphatic compounds were preferentially stabilized in fine fractions (<53 µm) due to the strong association with soil minerals (Baldock et al. 1992; Guggenberger et al. 1995; Clemente et al. 2011). The study found higher concentrations of these specific groups of compounds with relatively highly diversified crop rotations in comparison to low diversification (Table 2), suggesting that crop rotational diversity likely enhanced the accumulation of long-chain aliphatic compounds in fine fractions. These groups of compounds persist longer in soil (Schmidt et al. 2011), which suggests that high crop rotational diversity may enhance SOC stability in the long-term.

When comparing the relatively high and low diversified crop rotations, greater contributions of aromatic and phenolic carbon were observed in relatively high (more than two crop species) diversified crop rotations across fractions with overall SOM composition analysis (Table 2); however, the difference was not significant (P < 0.05). This result partially supports the second hypothesis that higher crop rotational diversity is likely shifting SOM composition towards more aromatic groups (Audette et al. 2021), but larger sample sizes and further studies are needed to ascertain this change. Enhanced aromatic and phenolic carbon accumulation and preservation with relatively high crop rotational diversity were also observed with the targeted compound analysis of extractable phenols derived from lignin (Fig. 3). These lignin-derived phenols were mainly distributed in F2–53 µm compared to other mineral-associated fractions (Fig. 3d) and the total concentrations of lignin-derived phenols in F2–53 µm and in the unfractionated soil had a positive correlation (Fig. A2). In F2–53 µm, the higher concentrations of total lignin-derived phenols with lower oxidation states in relatively high diversified crop rotations (Table 2) indicate that higher crop rotational diversity may facilitate the accumulation of this group of compounds in soil (Audette et al. 2021). Some studies found that constantly adding plant inputs with different molecular compositions (i.e., relatively high crop rotational diversity (King et al. 2020)) enhanced soil microbial dynamics and substrate acquisition, which may help promote SOM functional complexity and preservation (McDaniel et al. 2014; Lehmann et al. 2020). Although the overall SOM degradation state (from 13C NMR analysis) did not reveal differences between relatively high and low diversified crop rotations in this study, the distribution and degradation differences of specific SOM compounds were observed in fine fractions (F2–53 µm and F<2 µm). These results suggest that the crop rotational diversity is likely to foster the specific accumulation of SOM components in fine mineral-associated fractions.

Fig. 3.

The concentrations (which were normalized to soil organic carbon content of whole soil or fraction) of (a) total cinnamyls, (b) total syringyls, (c) total vanillyls and (d) sum of three groups of lignin-derived phenols, and lignin-derived phenols degradation state of (e) vanillyl phenols and (f) syringyl phenols among varied crop rotational diversities in the whole soil (Man et al. 2021), light fractions, F53–2000 µm, F2–53 µm and F<2 µm (error bars indicate standard error, n = 3 for whole soil (Man et al. 2021) and n = 2 for fraction samples). AAAA, CCCC, CCAA, CCSS, CCSW, and CCSWRC represent continuous alfalfa, continuous corn, corn–corn–alfalfa–alfalfa, corn–corn–soybean–soybean, corn–corn–soybean–winter wheat, and corn–corn–soybean–winter wheat with red clover, respectively.

cjss-2022-0058_f3.jpg

Fig. 4.

Plots of lignin distribution changed with varied crop rotations in different fractions (hallow symbols) compared with whole soil (Man et al. 2021) (solid symbols), where the error bars indicate standard error (n = 3 for whole soil (Man et al. 2021) and n = 2 for fraction samples); AAAA, CCCC, CCAA, CCSS, CCSW, and CCSWRC represent continuous alfalfa, continuous corn, corn–corn–alfalfa–alfalfa, corn–corn–soybean–soybean, corn–corn–soybean–winter wheat, and corn–corn–soybean–winter wheat with red clover, respectively.

cjss-2022-0058_f4.jpg

This study found that higher crop rotational diversity may increase soil carbon concentration and the accumulation of specific SOM components in soil fractions; meanwhile, the specific crop species (i.e., alfalfa and winter wheat) in the rotation may also alter soil carbon stabilization (King and Blesh 2018; King et al. 2020; Man et al. 2021). For example, alfalfa may help enhance soil carbon storage in agroecosystems, which is likely due to the high ability of photosynthetically fixed carbon (King et al. 2020) and high root biomass inputs (Li et al. 2019; Song et al. 2021). In this study, higher SOC concentration was observed in AAAA in both unfractionated soil and mineral-associated fractions than in other crop rotations (Table 1). This suggests that alfalfa is likely to increase carbon sequestration in soil (Gregorich et al. 2001; Sanford et al. 2012; Jarecki et al. 2018; Poffenbarger et al. 2020). When comparing CCAA and CCSS (both contained two types of crops), CCAA had higher long-chain aliphatic lipids and suberin- and cutin-derived compounds concentrations in mineral-associated fractions (F53–2000 µm, F2–53 µm and F<2 µm; Tables A2 and A3). This further suggests that alfalfa is likely to enhance the accumulation of specific SOM compounds in the mineral-stabilized carbon pools. Winter wheat, on the other hand, was also found to increase crop yield (Franzluebbers et al. 1994; Gagnon et al. 2019) and enhance SOC concentration due to deep root systems (Franzluebbers et al. 1994). However, increased mineral-associated SOC concentration in relatively high crop rotational diversity treatment in comparison to low diversification with and without winter wheat suggested that diversified crop rotation could be the main driver (Agomoh et al. 2021). In this study, the results indicated that the more diversified crop rotations (CCSW and CCSWRC) may enhance the accumulation of stabilized SOM components. However, these crop rotations contained winter wheat, which may also contribute to the enhancement of root-derived SOM (suberin-derived aliphatic lipids) concentrations. Therefore, further studies are needed to assess whether the crop rotational diversity or including winter wheat in the crop rotation controls the accumulation of stabilized SOM.

Conclusions

This study used molecular-level analyses to assess the biogeochemistry differences of carbon (including SOC and specific SOM component concentrations, as well as SOM degradation states) in soil fractions with diversified crop rotations. The results suggested that diversified crop rotations may help enhance SOC concentration in the long-term, especially for relatively high crop rotational diversity (CCSW and CCSWRC), where increased SOC concentrations in both light and mineral-associated fractions were observed. Accumulation of long-lived components (i.e., long-chain aliphatic lipids) in stabilized carbon pools (mineral-associated fractions) suggests that this practice may increase long-term SOC stability. These findings support our hypotheses that crop rotational diversity help to promote SOM stabilization in both active and stabilized carbon pools, thus may subsequently enhance soil stability and improve soil health and crop yields. The benefit of including alfalfa to build SOC was also confirmed from our results in which higher SOC concentrations and accumulation of long-chain aliphatic lipids in soil physical fractions were observed in crop rotations containing alfalfa. Overall, this study indicates that long-term diversified crop rotations may enhance SOM stability via the accumulation of longer-lived SOM components. Furthermore, our results demonstrate that soil carbon biogeochemical cycling in agroecosystems is altered uniquely by different crop rotation practices.

Acknowledgements

This research was supported by the Natural Sciences and Engineering Research Council (NSERC) of Canada Strategic Projects Grant. MJS is supported by NSERC via a Tier 1 Canada Research Chair in Integrative Molecular Biogeochemistry. We sincerely thank Dr. Ronald Soong for assistance with NMR acquisition.

Data availability

Available upon request to corresponding author. An Appendix A with additional data are included with this submission.

Author contributions

Huan Tong: conceptualization, data curation, formal analysis, investigation, methodology, validation, writing – original draft, writing – review & editing; Meiling Man: conceptualization, data curation, formal analysis, methodology, validation, writing – review & editing; Claudia Wagner-Riddle: conceptualization, funding acquisition, investigation, methodology, project administration, resources, writing – review & editing; Kari E. Dunfield: conceptualization, funding acquisition, project administration, resources, writing – review & editing; Bill Deen: conceptualization, methodology, resources, writing – review & editing; Myrna J. Simpson: conceptualization, funding acquisition, project administration, resources, supervision, writing – review & editing.

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Appendices

Appendix A

Detailed sequential extraction procedure

Soil fractions (light fraction 0.2 g; F53–2000 µm and F2–53 µm 15 g and F<2 µm 3 g) were weighed into 50 mL Teflon tubes and then sonicated with 30 mL of dichloromethane, dichloromethane and methanol mixture (1:1 by volume), and methanol (each for 15 min). Then the combined solvent extracts were filtered through GF/A and GF/F glass filters (Whatman, Kent, UK) and concentrated by rotary evaporation. The concentrated extracts were further dried with nitrogen (N2) gas in 2 mL glass vials (Otto and Simpson 2005). Air-dried solvent extracted samples were then base hydrolyzed with 20 mL of methanolic potassium hydroxide (KOH, 1 M in methanol) solution in Teflon lined bombs at 100 °C for 3 h. The samples were sonicated twice with a mixture of 15 mL dichloromethane and methanol (1:1 by volume). The combined extracts were centrifuged, and the supernatants were acidified to pH 1 with hydrochloric acid (HCl, 6 M in deionized water) and rotary evaporated. The solution was then liquid-liquid extracted three times with 30 mL of diethyl ether. The combined extracts were dried with anhydrous sodium sulphate (Na2SO4), concentrated by rotary evaporation, and evaporated to dryness under N2 gas in 2 mL glass vials (Goñi and Hedges 1990b; Otto and Simpson 2006a). The base hydrolyzed samples were then oxidized with 1 g CuO, 100 mg ammonium iron (II) sulphate hexahydrate [Fe(NH4)2(SO4)2·6H2O] and 15 mL of sodium hydroxide (NaOH, 2 M in deionized water) in Teflon lined bombs at 170 °C for 2.5 h. The extracts were acidified to the pH of 1 with 6 M HCl and kept at room temperature in the dark for 1 h to prevent the polymerization of cinnamic acids (Hedges and Ertel 1982; Hedges et al. 1988; Otto and Simpson 2006b). Then the supernatants were solid-phase extracted using HLB SPE cartridges (Waters Limited, Mississauga, ON, Canada) and eluted with 0.5 mL of dichloromethane, methyl acetate and pyridine mixture (70:25:5 by volume, three times) followed by two × 0.5 mL of methanol (Kaiser and Benner 2012). The extracts were dried with anhydrous Na2SO4, concentrated by rotary evaporation, and dried under N2 gas in 2 mL glass vials.

Fig. A1.

Solid-state 13C NMR spectra of fractionated (light fraction, F53–2000 µm, F2–53 µm and F<2 µm) soil samples (including continuous alfalfa (AAAA), continuous corn (CCCC), corn–corn–alfalfa–alfalfa (CCAA), corn–corn–soybean–soybean (CCSS), corn–corn–soybean–winter wheat (CCSW) and corn–corn–soybean–winter wheat with red clover (CCSWRC)) with four main regions: (a) alkyl carbon (0–50 ppm), (b) O-alkyl carbon (50–110 ppm), (c) aromatic and phenolic carbon (110–165 ppm) and (d) carboxyl and carbonyl carbon (165–220 ppm) (Baldock et al. 1992; Preston et al. 1997; Simpson et al. 2008).

cjss-2022-0058_fA1.jpg

Fig. A2.

Linear relations of targeted compound concentrations (µg/g OC of whole soil or fraction) between whole soil and fraction samples and the linear relation between relative soil organic matter (SOM) degradation and carbon to nitrogen (C:N) ratio of light fraction.

cjss-2022-0058_fA2.jpg

Table A1.

The soil fractionation yields and the soil organic carbon (SOC) concentration in fractions with the unit g OC/kg soil.

cjss-2022-0058_taba1.gif

Table A2.

Solvent extractable compound concentrations (which were normalized to soil organic carbon (OC) concentration of fractions, µg/g OC) from four fractions within crop rotation treatments (continuous alfalfa (AAAA), continuous corn (CCCC), corn–corn–alfalfa–alfalfa (CCAA), corn–corn–soybean–soybean (CCSS), corn–corn–soybean–winter wheat (CCSW) and corn–corn–soybean–winter wheat with red clover (CCSWRC)) (mean ± standard error; n = 2).

cjss-2022-0058_taba2.gif

Table A3.

Suberin- and cutin-derived compound concentrations (which were normalized to soil organic carbon (OC) concentration of fractions, µg/g OC) and degradation proxy from different fractions within varied treatments (continuous alfalfa (AAAA), continuous corn (CCCC), corn–corn–alfalfa–alfalfa (CCAA), corn–corn–soybean–soybean (CCSS), corn–corn–soybean–winter wheat (CCSW) and corn–corn–soybean–winter wheat with red clover (CCSWRC)) (mean ± standard error; n = 2).

cjss-2022-0058_taba3.gif

Table A4.

Lignin-derived phenols (vanillyls (vanillin, acetovanillone and vanillic acid), syringyls (syringaldehyde, acetosyringone and syringic acid) and cinnamyls (p-coumaric acid and ferulic acid)) concentrations (which were normalized to soil organic carbon (OC) concentration of fractions, µg/g OC) and degradation proxies from different fractions within varied treatments (continuous alfalfa (AAAA), continuous corn (CCCC), corn–corn–alfalfa–alfalfa (CCAA), corn–corn–soybean–soybean (CCSS), corn–corn–soybean–winter wheat (CCSW) and corn–corn–soybean–winter wheat with red clover (CCSWRC)) (mean ± standard error; n = 2).

cjss-2022-0058_taba4.gif

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© 2022 The Author(s).
Huan Tong, Meiling Man, Claudia Wagner-Riddle, Kari E. Dunfield, Bill Deen, and Myrna J. Simpson "Crop rotational diversity alters the composition of stabilized soil organic matter compounds in soil physical fractions," Canadian Journal of Soil Science 103(1), 213-233, (23 November 2022). https://doi.org/10.1139/cjss-2022-0058
Received: 12 April 2022; Accepted: 26 July 2022; Published: 23 November 2022
KEYWORDS
cutin
lignin
nuclear magnetic resonance
soil carbon concentration
suberin
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