In educational and research settings, Tetrahymena is an excellent model organismfor engaging students to investigate function, morphology, structure, phagocytosis, and ciliary motion. Here, we present applications of Wright stain and Sytox green as useful low-cost tools for phenotypic analysis. We used heat-fixed Tetrahymena followed by Wright-stain-labeled organelles at different stages of its life cycle. In addition, a low concentration of Wright stain, at 1 percent (vol/vol), enabled visualization of filled vacuoles with stain in live Tetrahymena. Furthermore, we identified that Sytox green fluorescence labels not only nuclei of pre-incubated cultures of Tetrahymena, but also nuclei and some notable cytoplasmic staining after heat fixation. These applications can be used alongside inverted, battery-operated, bright field, fluorescence microscopes (Miller et al., 2010), as well as Cellcams Martin & Shin, 2016) for acquiring images and time-lapse movies. In the future, these useful approaches can be applied broadly in many lab inquiry settings, such as toxicology and molecular genetics.