A unique two-day rhythm, circabidian rhythm, has been reported in the black chafer, Holotrichia parallela. However, it remains unknown how widely the circabidian rhythm appears in related species. We examined the activity rhythm and phylogeny of congeneric species inhabiting Japan to investigate the appearance of circabidian rhythms in a few subgenera of the genus Holotrichia. We found that Holotrichia picea also exhibited circabidian rhythm. In addition to the regular circabidian pattern, circabidian rhythms with day-switching or with a circadian activity component were also observed. In the day-switching pattern, H. picea switched appearance from odd to even days, or vice versa. In the circadian-like activity patterns, a major night activity and a minor dusk activity appeared alternately. Holotrichia kiotonensis, Holotrichia convexopyga, and Holotrichia loochooana loochooana exhibited a circadian rhythm. Two distinct clades, A and B, were recognized in the histone H3, cytochrome c oxidase subunit 1, and 16S ribosomal RNA phylogenetic trees. This phylogenetic separation was in accordance with the subgeneric classification based on external morphology in a previous study and with behavioral rhythm in the present study: clade A included Nigrotrichia group members, H. kiotonensis, H. convexopyga, H. loochooana loochooana, and H. loochooana okinawana, while clade B included Pedinotrichia group members, H. paralella and H. picea. We suggest that after separation into Nigrotrichia and Pedinotrichia, the behavioral trait of circabidian rhythm probably appeared once in an ancestral species of the Pedinotrichia group, including H. parallela and H. picea.

Protein tyrosine phosphatase, mitochondrial 1 (PTPMT1) is a mitochondrial phosphatase that is highly conserved in animals. Functional analyses using knockout animals have revealed a variety of physiological roles of PTPMT1 in vertebrates and insects. However, because of the high lethality of knockout in these animals, the roles of PTPMT1 in the later postembryonic development remain relatively obscure. In the present study, using the RNA interference technique, we analyzed PTPMT1 functions in later larval stages of the red flour beetle, Tribolium castaneum. PTPMT1 was expressed in both anterior and posterior parts of the body constitutively without obvious fluctuations from the middle larval instar through pupation. The PTPMT1-knockdown larvae injected with PTPMT1 double-stranded RNA at the middle instar showed a prolonged larval period, which was mainly caused by an extra larval molt. On the other hand, the increase in adult body length was subtle in the PTPMT1-knockdown T. castaneum, and the head capsule width was smaller than that of the control animals at the same larval instar. The expression levels of genes encoded by the mitochondrial genome were reduced in PTPMT1-knockdown larvae, indicating that PTPMT1 plays an important role in mitochondrial function in T. castaneum, like in other species. By contrast, the expression levels of a juvenile hormone (JH)-biosynthetic gene and a JH-signaling gene were rather increased in the PTPMT1-knockdown larvae, which may have been caused indirectly by the reduction of larval growth rate. Altogether, these findings indicate that PTPMT1 is required for the proper growth rate via some mitochondrial physiological role in T. castaneum larvae.

Stream-dwelling white-spotted charr, Salvelinus leucomaenis, populations tend to have unique color and spot patterns in different regions and may even display stream-specific patterns. An extreme edge of such diversity, found in individuals with atypical body color patterns (so-called nagaremon-type charr, a rare morphotype of Salvelinus leucomaenis [hereafter termed nagaremon-charr]), sympatrically occurring with normal-charr, has been reported from only six small isolated populations in Japan. Based on morphological and ecological perspectives, nagaremon-charr has been considered as an intraspecific color variant of white-spotted charr, although the genetic status of nagaremon-charr has not been determined. In this study, genetic diversity and population structure of the nagaremon-charr in a tributary of the Ane River (Lake Biwa system) were investigated through microsatellite and mtDNA analyses. Nagaremon-charr and sympatric normal-charr in the tributary shared the mtDNA haplotypes and were assigned to the same cluster in the STRUCTURE analysis and discriminant analysis of principal components (DAPC). These results suggested that nagaremon-charr in the Ane River is an intra-populational specific color variant of white-spotted charr. Above a waterfall, nagaremon-charr specimens exhibited extremely reduced genetic diversity, indicating that genetic drift may account for the fixation of the nagaremon-morphotype. Normal-charr below the waterfall clustered separately from hatchery-reared charr, indicative of native status of the former. Thus, both nagaremon-charr and normal-charr in the entire Ane River tributary should be conserved.

Gene/transcript model sets predicted from decoded genome sequences are an important resource for a wide range of biological studies. Accuracy of gene models is therefore critical for deducing accurate conclusions. Computationally predicted models are sometimes inconsistent with experimental data from cDNA clones and RNA-sequencing. In an ascidian, Ciona robusta (Ciona intestinalis type A), a manually curated gene/transcript model set, which was constructed using an assembly in which 68% of decoded sequences were associated with chromosomes, had been used during the last decade. Recently a new genome assembly was published, in which over 95% of decoded sequences are associated with chromosomes. In the present study, we provide a high-quality version of the gene/transcript model set for the latest assembly. Because the Ciona genome has been used in a variety of studies such as developmental biological studies, evolutionary studies, and physiological studies, the current gene/transcript model set provides a fundamental biological resource.

At-sea habitat use of breeding seabirds is strongly influenced by marine environmental features that vary over space and time. The use of bio-loggers allows researchers to track fine-scale movements of seabirds and provides opportunities to identify the primary factors affecting their area use for foraging. Using GPS loggers, we tracked chick-rearing rhinoceros auklets (Cerorhinca monocerata), which are wing-propelled divers, at Daikoku Island, eastern Hokkaido, Japan. The central phase for foraging activity on birds' trips was determined using a multiple change points model. To examine environmental factors explaining the distribution of the foraging phase, a generalized additive model was used where sea surface temperature, chlorophyll a concentration, bathymetry, and distance from the colony were explanatory variables. To obtain information supporting the behavioral tracking, prey items in the bill-loads of adult auklets were collected. We found that auklets foraged over the continental shelf shallower than the 200-m isobath and that distance from the colony was related to the area use. Adult auklets predominately brought back age-0 chum salmon (Oncorhynchus keta), which was abundant in coastal waters along southeast Hokkaido during the study period. Our findings indicate that rhinoceros auklets rearing chicks, hence visiting nests frequently, on Daikoku Island can find suitable feeding grounds nearby.

Although isopods in Anthuroidea are predators, there is little information on their predatory behavior. In this study, we investigated predation by the paranthurid Paranthura japonica, which was originally described from northern Japan but has recently been reported as an invasive alien species in western America and Europe. Six crustacean species (two isopods, two amphipods, and two tanaidaceans, one of which does not co-occur with P. japonica in the wild) and one pycnogonid species were used as prey candidates in our experiments. Paranthura japonica preyed on all candidate species except the pycnogonid, grasping them with its falciform pereopods, inserting its piercing-type mouthparts, and sucking out the internal contents of the prey. Cannibalism or scavenging was observed when several P. japonica individuals were put in a single aquarium. This study showed that P. japonica is an aggressive predator; it consumed various crustaceans, including one it never encounters in the wild. Our results suggest that P. japonica will have a high impact on alien ecosystems it invades as a predator on native crustaceans. Cytochrome c oxidase subunit (COI) nucleotide sequences for putative P. japonica from Oshoro, Japan and a topotypic individual from Muroran confirmed that the population we dealt with was P. japonica.

Canine distemper virus (CDV) is a highly fatal virus to the giant panda (Ailuropoda melanoleuca). Although vaccination is a key preventative measure in captive giant pandas, the immune response of giant pandas after vaccination remains unclear. Therefore, this study focuses on differential alternative splicing (DAS) events of giant pandas before and after vaccination to investigate the role of alternative splicing in the immune response of giant pandas after CDV vaccination. In this study, we identified 1113 DAS genes, which had 1288 DAS events. The KEGG functional enrichment analysis of DAS genes showed enrichment of some DNA damage repair and immune-related pathways. In the combined analysis of DAS and differentially expressed genes (from our previous research), we identified 66 differentially expressed genes with a DAS event, and found that some important immune-related genes, such as IL15, IL18, IL18RAP, CHUK, IFI44, CD40, and CD46 underwent DAS events and were involved in the immune response of giant pandas after CDV vaccination. We describe here the alternative splicing events of giant pandas after CDV vaccination for the first time and show that the results indicated that alternative splicing has an important role in regulating the immune response of giant pandas after vaccination.

Nanos is one of the components of germ plasm and is evolutionarily conserved from flies to mammals. In medaka (Oryzias latipes), maternally provided nanos3 is essential for maintenance of primordial germ cells (PGCs). Here, we generated nanos3 loss-of-function mutants by using transcription activator-like effector nuclease (TALEN) and examined the function of zygotic nanos3 in medaka. Zygotic nanos3 homozygous (–/–) mutants derived from nanos3 heterozygous mothers formed germ cells. However, after hatching, the number of germ cells decreased considerably, resulting in infertility of both nanos3^–/– females and males. Surprisingly, both nanos3^–/– XX and XY mutants underwent precocious spermatogenesis during early gonadal development, as seen in loss-of-function mutants of foxl3, the germline sex-determination gene, in medaka. Therefore, in addition to the maintenance of germ cells, these results suggest that zygotic nanos3 affects the proper regulation of germline sex in XX medaka.

Deep-sea hydrothermal vents are ‘extreme’ environments harboring diverse animal communities, powered by chemosynthesis. Though vent-endemic macrofauna have been a center of interest since their discovery in 1977, macroparasites have received little attention. Here, we report a bopyrid epicaridean isopod infesting the symbiotic munidopsid squat lobster Shinkaia crosnieri Baba and Williams, 1998 from three vent fields of Okinawa Trough, and describe it as Pleurocryptella shinkai sp. nov. Although morphologically close to the congeners Pleurocryptella formosa Bonnier, 1900, Pleurocryptella wolffi Bourdon, 1972, and Pleurocryptella altalis Williams, Boyko, and Marin, 2020, both females (via body proportion and characters of barbula, antennae, pleopods, and pleomeres) and males (via features of the head, pleomeres, and uropods) of the new species exhibit distinctive characters. Phylogenetic reconstruction based on the 18S rRNA gene (850 bp) was insufficiently resolved to clarify the relationship of different epicaridean lineages or the exact position of P. shinkai sp. nov., but it recovered P. shinkai sp. nov. in a distant position from the type genus of Pseudioninae, indicating non-monophyly of this subfamily. Crustaceans are successful in vents but this is only the second vent epicaridean reported, after Thermaloniscus cotylophorus Bourdon, 1983 from the East Pacific Rise described from a single cryptoniscus larva. As such, this is the first report of a vent bopyrid isopod and the first vent epicaridean with a known host. Some epicaridean lineages have adapted to tolerating the conditions of hydrothermal vents, and future research will likely uncover more epicarideans and other interesting parasites from these extreme habitats.